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GSE67402: E.coli regulatory changes under long-term starvation

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Results for GalR

Z-value: 0.23

Transcription factors associated with GalR

Gene Symbol Gene ID Gene Info
galR
galR GalR DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
galR0.029.1e-01Click!

Activity profile of GalR motif

Sorted Z-values of GalR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
mglBAC 1.82
mglA
mglB
mglC
D-galactose / D-galactoside ABC transporter - ATP binding subunit
D-galactose / D-galactoside ABC transporter - periplasmic binding protein
D-galactose / D-galactoside ABC transporter - membrane subunit
galS 1.11
galS
GalS DNA-binding transcriptional dual regulator
galE 0.85
galE
UDP-glucose 4-epimerase
galET 0.56
galT
galE
galactose-1-phosphate uridylyltransferase
UDP-glucose 4-epimerase
galETK 0.24
galT
galE
galK
galactose-1-phosphate uridylyltransferase
UDP-glucose 4-epimerase
galactokinase
galR 0.01
galR
GalR DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of GalR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0015765 methylgalactoside transport(GO:0015765)
0.3 1.4 GO:0033499 galactose catabolic process via UDP-galactose(GO:0033499)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.8 GO:0098533 ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0015592 methylgalactoside transmembrane transporter activity(GO:0015592)
0.3 1.4 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates