GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
putA Links RegulonDB EcoCyc	puitA	fused DNA-binding transcriptional repressor proline dehydrogenase 1-pyrroline-5-carboxylate dehydrogenase PutA

Promoter	Log-likelihood	Transcript	Gene	Gene Info
putA Show fit	2.82		putA Links RegulonDB EcoCyc Show fit	fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase
putP Show fit	1.97		putP Links RegulonDB EcoCyc Show fit	proline:Na+ symporter

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.8	GO:0009065	glutamine family amino acid catabolic process(GO:0009065)
0.2	2.0	GO:0006869	lipid transport(GO:0006869) neutral amino acid transport(GO:0015804)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.8	GO:0098562	cytoplasmic side of plasma membrane(GO:0009898) cytoplasmic side of membrane(GO:0098562)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	2.0	GO:0005416	cation:amino acid symporter activity(GO:0005416)
0.6	2.8	GO:0001141	transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001141) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217)