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GSE67402: E.coli regulatory changes under long-term starvation

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Results for NimR

Z-value: 0.66

Transcription factors associated with NimR

Gene Symbol Gene ID Gene Info
nimR
nimR NimR DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nimR-0.311.1e-01Click!

Activity profile of NimR motif

Sorted Z-values of NimR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
nimR 10.81
nimR
NimR DNA-binding transcriptional repressor
nimT 9.98
nimT
drug (nitroimidazole) efflux pump

Network of associatons between targets according to the STRING database.

First level regulatory network of NimR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 10.0 GO:0046677 response to antibiotic(GO:0046677)
0.2 10.8 GO:1903507 negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 10.0 GO:0016021 integral component of membrane(GO:0016021)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 10.8 GO:0003677 DNA binding(GO:0003677)
0.1 10.0 GO:0022857 transmembrane transporter activity(GO:0022857)