ISMARA results: NimR

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GSE67402: E.coli regulatory changes under long-term starvation

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Results for NimR

Z-value: 0.66

Transcription factors associated with NimR

Gene Symbol	Gene ID	Gene Info
nimR RegulonDB EcoCyc	nimR	NimR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nimR		-0.31	1.1e-01	Click!

Activity profile of NimR motif

Sorted Z-values of NimR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
nimR Show fit	10.81		nimR RegulonDB EcoCyc Show fit	NimR DNA-binding transcriptional repressor
nimT Show fit	9.98		nimT RegulonDB EcoCyc Show fit	drug (nitroimidazole) efflux pump

Showing 1 to 2 of 2 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of NimR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	10.8	GO:1903507	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.3	10.0	GO:0046677	response to antibiotic(GO:0046677)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	10.0	GO:0016021	integral component of membrane(GO:0016021)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	10.8	GO:0003677	DNA binding(GO:0003677)
0.1	10.0	GO:0022857	transmembrane transporter activity(GO:0022857)

Showing 1 to 2 of 2 entries

Results for NimR

Z-value: 0.66

Transcription factors associated with NimR

Activity-expression correlation:

Activity profile of NimR motif

Sorted Z-values of NimR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of NimR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: