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GSE67402: E.coli regulatory changes under long-term starvation

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Results for RcsB

Z-value: 0.81

Transcription factors associated with RcsB

Gene Symbol Gene ID Gene Info
rcsB DNA-binding transcriptional activator RcsB

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rcsB0.222.7e-01Click!

Activity profile of RcsB motif

Sorted Z-values of RcsB motif

Promoter Log-likelihood Transcript Gene Gene Info
osmB 18.58 OsmB osmotically inducible lipoprotein
hdeD 8.79 acid-resistance membrane protein
rprA 7.55 RprA
bdm-sra 5.32 biofilm-dependent modulation protein
30S ribosomal subunit protein S22
gadBC 4.63 glutamate decarboxylase B subunit
glutamic acid:4-aminobutyrate antiporter
safA-ydeO 4.13 YdeO DNA-binding transcriptional dual regulator
two-component system connector protein
hdeAB-yhiD 1.88 inner membrane protein YhiD
HdeB monomer
HdeA monomer, chaperone active form
osmC 1.33 osmotically inducible peroxiredoxin

Network of associatons between targets according to the STRING database.

First level regulatory network of RcsB

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.8 5.3 GO:0031346 positive regulation of cell projection organization(GO:0031346)
0.6 10.1 GO:0009268 response to pH(GO:0009268)
0.1 1.3 GO:0006972 hyperosmotic response(GO:0006972)
0.0 3.6 GO:0065007 biological regulation(GO:0065007)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 5.3 GO:0022627 small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627)
0.0 8.8 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.9 GO:0051087 chaperone binding(GO:0051087)
0.4 1.3 GO:0051920 peroxiredoxin activity(GO:0051920)
0.3 4.6 GO:0015297 antiporter activity(GO:0015297)