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GSE67402: E.coli regulatory changes under long-term starvation

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Results for TorR

Z-value: 1.21

Transcription factors associated with TorR

Gene Symbol Gene ID Gene Info
torR
torR TorR transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
torR-0.625.6e-04Click!

Activity profile of TorR motif

Sorted Z-values of TorR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
tnaC 20.55
tnaC
tryptophanase operon leader peptide
tnaCAB 17.47
tnaA
tnaC
tnaB
tryptophanase
tryptophanase operon leader peptide
tryptophan:H+ symporter TnaB
torCAD 15.25
torD
torA
torC
chaperone protein for trimethylamine-N-oxide oxidoreductase I
trimethylamine N-oxide reductase, catalytic subunit
trimethylamine N-oxide reductase, cytochrome c-type subunit
torR 13.23
torR
TorR transcriptional dual regulator
hdeAB-yhiD 5.84
yhiD
hdeB
hdeA
inner membrane protein YhiD
HdeB monomer
HdeA monomer, chaperone active form

Network of associatons between targets according to the STRING database.

First level regulatory network of TorR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
9.5 38.0 GO:0090357 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) regulation of tryptophan metabolic process(GO:0090357)
1.2 5.8 GO:0071468 cellular response to acidic pH(GO:0071468)
0.7 15.2 GO:0051604 protein maturation(GO:0051604)
0.0 3.1 GO:0006355 regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 15.2 GO:1990204 oxidoreductase complex(GO:1990204)
0.1 23.3 GO:0005886 plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.8 15.2 GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662)
3.5 17.5 GO:0080146 L-cysteine desulfhydrase activity(GO:0080146)
2.2 13.2 GO:0000156 phosphorelay response regulator activity(GO:0000156)
1.9 5.8 GO:0051087 chaperone binding(GO:0051087)