Project

GSE67402: E.coli regulatory changes under long-term starvation

Navigation
Downloads

Results for RutR

Z-value: 0.63

Transcription factors associated with RutR

Gene Symbol Gene ID Gene Info
rutR
rutR RutR DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rutR-0.671.4e-04Click!

Activity profile of RutR motif

Sorted Z-values of RutR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
nemRA 4.26
nemA
nemR
N-ethylmaleimide reductase, FMN-linked
NemR DNA-binding transcriptional repressor
rutR 4.21
rutR
RutR DNA-binding transcriptional dual regulator
fepB 3.64
fepB
ferric enterobactin ABC transporter - periplasmic binding protein
gadX 3.09
gadX
GadX DNA-binding transcriptional dual regulator
gadXW 2.68
gadW
gadX
GadW DNA-binding transcriptional dual regulator
GadX DNA-binding transcriptional dual regulator
rutABCDEFG 2.58
rutC
rutB
rutA
rutG
rutF
rutE
rutD
predicted aminoacrylate peracid reductase
peroxyureidoacrylate / ureidoacrylate amido hydrolase
pyrimidine oxygenase
uracil:H+ symporter RutG
flavin reductase
predicted malonic semialdehyde reductase
predicted aminoacrylate hydrolase
pdeR 0.01
pdeR
cyclic di-GMP phosphodiesterase

Network of associatons between targets according to the STRING database.

First level regulatory network of RutR

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 3.6 GO:0015685 ferric-enterobactin transport(GO:0015685)
0.9 2.6 GO:0015855 pyrimidine nucleobase catabolic process(GO:0006208) pyrimidine nucleobase transport(GO:0015855)
0.7 2.1 GO:0072491 trinitrotoluene metabolic process(GO:0018973) 2,4,6-trinitrotoluene metabolic process(GO:0018974) nitrotoluene metabolic process(GO:0019326) 2,4,6-trinitrotoluene catabolic process(GO:0046256) trinitrotoluene catabolic process(GO:0046260) nitrotoluene catabolic process(GO:0046263) toluene-containing compound metabolic process(GO:0072490) toluene-containing compound catabolic process(GO:0072491)
0.2 10.0 GO:1903508 positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 3.6 GO:0030288 outer membrane-bounded periplasmic space(GO:0030288)
0.0 2.6 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 4.8 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.6 GO:0005350 monooxygenase activity(GO:0004497) pyrimidine nucleobase transmembrane transporter activity(GO:0005350)
0.7 5.8 GO:0001140 transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)
0.7 2.1 GO:0034567 chromate reductase activity(GO:0034567)
0.2 4.2 GO:0000976 transcription regulatory region sequence-specific DNA binding(GO:0000976)