GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
mntR Links RegulonDB EcoCyc	mntR	MntR transcriptional dual regulator

Promoter	Log-likelihood	Transcript	Gene	Gene Info
mntH Show fit	15.69		mntH Links RegulonDB EcoCyc Show fit	Mn2+ / Fe2+: H+ symporter MntH
rybA-mntS Show fit	13.14		rybA Links RegulonDB EcoCyc Show fit mntS Links RegulonDB EcoCyc Show fit	RybA small protein MntS
mntP Show fit	11.08		mntP Links RegulonDB EcoCyc Show fit	manganese export protein
dps Show fit	1.57		dps Links RegulonDB EcoCyc Show fit	stationary phase nucleoid protein that sequesters iron and protects DNA from damage

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
5.2	15.7	GO:0006824	cobalt ion transport(GO:0006824)
1.4	24.2	GO:1990267	response to transition metal nanoparticle(GO:1990267)
0.1	1.6	GO:0042594	response to starvation(GO:0042594)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	26.8	GO:0005886	plasma membrane(GO:0005886)
0.0	1.6	GO:0016020	membrane(GO:0016020)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.7	15.7	GO:0015078	hydrogen ion transmembrane transporter activity(GO:0015078) divalent inorganic cation transmembrane transporter activity(GO:0072509)
1.1	11.1	GO:0046915	transition metal ion transmembrane transporter activity(GO:0046915)
0.0	1.6	GO:0005506	iron ion binding(GO:0005506)