Project
GSE67402: E.coli regulatory changes under long-term starvation
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Results for KdgR
Z-value: 0.45
Transcription factors associated with KdgR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
kdgR
|
kdgR | KdgR DNA-binding transcriptional repressor |
Activity profile of KdgR motif
Sorted Z-values of KdgR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| eda | 8.25 |
eda
|
multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase |
|
| edd-eda | 2.53 |
eda
edd
|
multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase phosphogluconate dehydratase |
Network of associatons between targets according to the STRING database.
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.5 | GO:0019521 | D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.8 | GO:0016020 | membrane(GO:0016020) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 10.8 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.6 | 10.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |