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GSE67402: E.coli regulatory changes under long-term starvation

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Results for XylR

Z-value: 0.54

Transcription factors associated with XylR

Gene Symbol Gene ID Gene Info
xylR XylR transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
xylR-0.618.1e-04Click!

Activity profile of XylR motif

Sorted Z-values of XylR motif

Promoter Log-likelihood Transcript Gene Gene Info
araC 7.61 AraC DNA-binding transcriptional dual regulator
xylAB 2.35 xylose isomerase
xylulokinase
xylFGHR 2.23 xylose ABC transporter - membrane subunit
XylR transcriptional dual regulator
xylose ABC transporter - ATP binding subunit
xylose ABC transporter - periplasmic binding protein

Network of associatons between targets according to the STRING database.

First level regulatory network of XylR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 7.6 GO:0019566 arabinose metabolic process(GO:0019566) arabinose catabolic process(GO:0019568)
0.4 2.2 GO:0015750 pentose transport(GO:0015750)
0.3 2.4 GO:0019321 pentose metabolic process(GO:0019321)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.2 GO:0098533 ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)
0.0 7.6 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.2 GO:0048029 pentose transmembrane transporter activity(GO:0015146) monosaccharide binding(GO:0048029)
0.2 2.4 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 7.6 GO:0005515 protein binding(GO:0005515)