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GSE67402: E.coli regulatory changes under long-term starvation
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Results for GadE-RcsB
Z-value: 0.62
Transcription factors associated with GadE-RcsB
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
gadE
|
gadE | GadE DNA-binding transcriptional activator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| gadE | -0.88 | 2.3e-09 | Click! |
Activity profile of GadE-RcsB motif
Sorted Z-values of GadE-RcsB motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| adiC | 7.94 |
adiC
|
AdiC arginine:agmatine antiporter |
|
| yhiM | 4.62 |
yhiM
|
inner membrane protein with a role in acid resistance |
|
| cadBA | 4.29 |
cadA
cadB
|
lysine decarboxylase 1 lysine:cadaverine antiporter |
|
| aslB | 3.20 |
aslB
|
predicted anaerobic sulfatase maturation enzyme |
|
| slp-dctR | 2.56 |
slp
dctR
|
starvation lipoprotein predicted DNA-binding transcriptional regulator |
Network of associatons between targets according to the STRING database.
First level regulatory network of GadE-RcsB
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 12.2 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.9 | 4.6 | GO:0071229 | cellular response to acid chemical(GO:0071229) |
| 0.9 | 2.6 | GO:0043471 | regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) |
| 0.1 | 3.2 | GO:0051604 | protein maturation(GO:0051604) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 2.6 | GO:0019867 | outer membrane(GO:0019867) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 12.2 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 2.6 | GO:0042802 | identical protein binding(GO:0042802) |