GSE67402: E.coli regulatory changes under long-term starvation
Gene Symbol | Gene ID | Gene Info |
---|---|---|
argP
|
argP | ArgP transcriptional activator |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
argP | 0.76 | 4.3e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
nrdAB-yfaE | 20.55 |
nrdA
nrdB
yfaE
|
ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance |
|
gdhA | 17.30 |
gdhA
|
glutamate dehydrogenase |
|
lysC | 11.14 |
lysC
|
aspartate kinase III |
|
argP | 8.91 |
argP
|
ArgP transcriptional activator |
|
dapD | 8.90 |
dapD
|
tetrahydrodipicolinate succinylase |
|
lysP | 6.89 |
lysP
|
lysine:H+ symporter |
|
dnaAN-recF | 4.12 |
dnaA
recF
dnaN
|
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit |
|
dapB | 2.01 |
dapB
|
4-hydroxy-tetrahydrodipicolinate reductase |
|
lysA | 1.43 |
lysA
|
diaminopimelate decarboxylase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.7 | 11.1 | GO:0009090 | homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092) |
3.6 | 10.9 | GO:0019877 | diaminopimelate biosynthetic process(GO:0019877) |
3.4 | 20.5 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
3.0 | 8.9 | GO:0030174 | regulation of DNA-dependent DNA replication initiation(GO:0030174) negative regulation of DNA-dependent DNA replication(GO:2000104) |
2.2 | 17.3 | GO:0043650 | dicarboxylic acid biosynthetic process(GO:0043650) |
2.1 | 4.1 | GO:0006275 | regulation of DNA replication(GO:0006275) |
1.4 | 6.9 | GO:1902022 | lysine transport(GO:0015819) L-lysine transport(GO:1902022) |
0.4 | 1.4 | GO:0046451 | diaminopimelate metabolic process(GO:0046451) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 20.5 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.1 | 43.5 | GO:0005829 | cytosol(GO:0005829) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.8 | 20.5 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
3.7 | 11.1 | GO:0004072 | aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202) |
2.9 | 17.3 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
1.8 | 8.9 | GO:0016748 | succinyltransferase activity(GO:0016748) |
1.3 | 8.9 | GO:0003681 | bent DNA binding(GO:0003681) |
0.2 | 2.0 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.1 | 4.1 | GO:1990837 | sequence-specific double-stranded DNA binding(GO:1990837) |
0.1 | 1.4 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.0 | 6.9 | GO:0042802 | identical protein binding(GO:0042802) |