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GSE67402: E.coli regulatory changes under long-term starvation

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Results for PspF

Z-value: 0.94

Transcription factors associated with PspF

Gene Symbol Gene ID Gene Info
pspF PspF DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
pspF-0.413.2e-02Click!

Activity profile of PspF motif

Sorted Z-values of PspF motif

Promoter Log-likelihood Transcript Gene Gene Info
pspG 17.07 phage shock protein G
pspABCDE 13.94 thiosulfate sulfurtransferase
peripheral inner membrane phage-shock protein
PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair
stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair
regulatory protein for the phage shock operon, protects membrane integrity
pspF 4.69 PspF DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of PspF

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
7.8 31.0 GO:0043207 response to biotic stimulus(GO:0009607) response to virus(GO:0009615) response to external biotic stimulus(GO:0043207) response to other organism(GO:0051707)
0.1 4.7 GO:0051254 positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 13.9 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.0 17.1 GO:0005886 plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.5 13.9 GO:0005543 phospholipid binding(GO:0005543)
0.1 4.7 GO:0043565 sequence-specific DNA binding(GO:0043565)