Project

GSE67402: E.coli regulatory changes under long-term starvation

Navigation
Downloads

Results for SoxR

Z-value: 0.81

Transcription factors associated with SoxR

Gene Symbol Gene ID Gene Info
soxR
soxR SoxR DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
soxR-0.357.6e-02Click!

Activity profile of SoxR motif

Sorted Z-values of SoxR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
soxR 12.12
soxR
SoxR DNA-binding transcriptional dual regulator
fumC 9.69
fumC
fumarase C
soxS 7.34
soxS
SoxS DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of SoxR

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.2 9.7 GO:0006108 malate metabolic process(GO:0006108)
0.2 12.1 GO:0006979 response to oxidative stress(GO:0006979)
0.0 7.3 GO:0006355 regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 21.8 GO:0005737 cytoplasm(GO:0005737)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.4 7.3 GO:0001098 basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108)
1.9 9.7 GO:0004333 fumarate hydratase activity(GO:0004333)
0.7 12.1 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)