GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
uxuR
|
uxuR | UxuR DNA-binding transcriptional repressor |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| uxuR | -0.31 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| gntP | 23.41 |
gntP
|
gluconate / fructuronate transporter GntP |
|
| uidABC | 10.23 |
uidB
uidC
uidA
|
glucuronide:H+ symporter outer membrane-associated protein β-D-glucuronidase |
|
| lgoR | 7.17 |
lgoR
|
predicted DNA-binding transcriptional regulator |
|
| uxuAB | 6.74 |
uxuA
uxuB
|
D-mannonate dehydratase D-mannonate oxidoreductase |
|
| exuR | 3.02 |
exuR
|
ExuR DNA-binding transcriptional repressor |
|
| uxuR | 2.24 |
uxuR
|
UxuR DNA-binding transcriptional repressor |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.8 | 23.4 | GO:0042873 | aldonate transport(GO:0042873) |
| 2.2 | 6.7 | GO:0006063 | uronic acid metabolic process(GO:0006063) |
| 1.2 | 7.2 | GO:0046176 | aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176) |
| 0.9 | 10.2 | GO:1901658 | glycosyl compound catabolic process(GO:1901658) |
| 0.0 | 3.0 | GO:0045892 | negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507) |
| 0.0 | 2.2 | GO:0006351 | transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.6 | 10.2 | GO:0043231 | membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231) |
| 0.1 | 23.4 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.7 | 23.4 | GO:0015128 | gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879) |
| 0.5 | 10.2 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553) |
| 0.3 | 6.7 | GO:0008198 | ferrous iron binding(GO:0008198) |