GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
hypT
|
hypT | HypT transcriptional dual regulator |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| cysH | 37.56 |
cysH
|
3'-phospho-adenylylsulfate reductase |
|
| fecABCDE | 32.15 |
fecD
fecE
fecB
fecC
fecA
|
ferric citrate ABC transporter - membrane subunit ferric citrate ABC transporter - ATP binding subunit ferric citrate ABC transporter - periplasmic binding protein ferric citrate ABC transporter - membrane subunit ferric citrate outer membrane porin FecA |
|
| metNIQ | 22.67 |
metI
metN
metQ
|
L-methionine / D-methionine ABC transporter - membrane subunit L-methionine / D-methionine ABC transporter - ATP binding subunit L-methionine / D-methionine ABC transporter - periplasmic binding protein |
|
| cydAB | 3.17 |
cydA
cydB
|
cytochrome bd-I terminal oxidase subunit I cytochrome bd-I terminal oxidase subunit II |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.7 | 22.7 | GO:0000101 | sulfur amino acid transport(GO:0000101) |
| 4.6 | 32.1 | GO:0072512 | ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512) |
| 0.8 | 3.2 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
| 0.8 | 33.2 | GO:0006790 | sulfur compound metabolic process(GO:0006790) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.6 | 22.7 | GO:0009274 | peptidoglycan-based cell wall(GO:0009274) |
| 2.9 | 32.1 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
| 1.1 | 3.2 | GO:0070069 | cytochrome complex(GO:0070069) |
| 0.1 | 33.2 | GO:0005737 | cytoplasm(GO:0005737) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.6 | 32.1 | GO:0015603 | iron chelate transmembrane transporter activity(GO:0015603) |
| 3.8 | 37.6 | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671) |
| 3.2 | 22.7 | GO:1901682 | sulfur compound transmembrane transporter activity(GO:1901682) |
| 1.1 | 3.2 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |