GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
metJ
|
metJ | MetJ transcriptional repressor |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| metJ | 0.87 | 5.1e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| metE | 48.48 |
metE
|
cobalamin-independent homocysteine transmethylase |
|
| folE-yeiB | 43.97 |
folE
yeiB
|
GTP cyclohydrolase I conserved inner membrane protein |
|
| ahpCF | 32.35 |
ahpF
ahpC
|
alkyl hydroperoxide reductase, AhpF component alkyl hydroperoxide reductase, AhpC component |
|
| metNIQ | 20.01 |
metI
metN
metQ
|
L-methionine / D-methionine ABC transporter - membrane subunit L-methionine / D-methionine ABC transporter - ATP binding subunit L-methionine / D-methionine ABC transporter - periplasmic binding protein |
|
| metK | 5.11 |
metK
|
methionine adenosyltransferase |
|
| metC | 3.66 |
metC
|
cystathionine-β-lyase / L-cysteine desulfhydrase |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 16.2 | 48.5 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
| 10.8 | 32.3 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 5.5 | 49.1 | GO:0042455 | ribonucleoside biosynthetic process(GO:0042455) |
| 5.0 | 20.0 | GO:0000101 | sulfur amino acid transport(GO:0000101) |
| 1.2 | 3.7 | GO:0044273 | sulfur compound catabolic process(GO:0044273) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 12.1 | 48.5 | GO:0005576 | extracellular region(GO:0005576) |
| 6.7 | 20.0 | GO:0009274 | peptidoglycan-based cell wall(GO:0009274) |
| 1.5 | 32.3 | GO:1990204 | oxidoreductase complex(GO:1990204) |
| 0.4 | 44.0 | GO:0043234 | protein complex(GO:0043234) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 12.1 | 48.5 | GO:0008172 | S-methyltransferase activity(GO:0008172) |
| 11.0 | 44.0 | GO:0019238 | cyclohydrolase activity(GO:0019238) |
| 10.8 | 32.3 | GO:0070402 | NADPH binding(GO:0070402) |
| 2.9 | 20.0 | GO:1901682 | sulfur compound transmembrane transporter activity(GO:1901682) |
| 0.9 | 3.7 | GO:0080146 | L-cysteine desulfhydrase activity(GO:0080146) |
| 0.7 | 5.1 | GO:0030955 | potassium ion binding(GO:0030955) |