GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
araC
|
araC | AraC DNA-binding transcriptional dual regulator |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| araC | 0.11 | 5.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| araBAD | 32.43 |
araB
araA
araD
|
L-ribulokinase L-arabinose isomerase L-ribulose 5-phosphate 4-epimerase |
|
| araC | 25.74 |
araC
|
AraC DNA-binding transcriptional dual regulator |
|
| ydeNM | 24.49 |
ydeM
ydeN
|
predicted anaerobic sulfatase maturation enzyme putative sulfatase |
|
| araE | 20.09 |
araE
|
arabinose:H+ symporter |
|
| araFGH | 13.40 |
araF
araG
araH
|
arabinose ABC transporter - periplasmic binding protein arabinose ABC transporter - ATP binding subunit arabinose ABC transporter - membrane subunit |
|
| araJ | 13.27 |
araJ
|
putative transport protein, major facilitator superfamily |
|
| xylAB | 13.03 |
xylA
xylB
|
xylose isomerase xylulokinase |
|
| araE-ygeA | 11.57 |
ygeA
araE
|
predicted racemase arabinose:H+ symporter |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 15.0 | 45.1 | GO:0042882 | L-arabinose transport(GO:0042882) |
| 14.5 | 58.2 | GO:0019568 | arabinose metabolic process(GO:0019566) arabinose catabolic process(GO:0019568) |
| 1.3 | 13.0 | GO:0019323 | pentose catabolic process(GO:0019323) |
| 1.1 | 24.5 | GO:0051604 | protein maturation(GO:0051604) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 13.4 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
| 0.3 | 24.5 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.2 | 31.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 13.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 58.2 | GO:0005829 | cytosol(GO:0005829) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 15.0 | 45.1 | GO:0015147 | L-arabinose transmembrane transporter activity(GO:0015147) |
| 10.8 | 32.4 | GO:0008742 | L-ribulose-phosphate 4-epimerase activity(GO:0008742) |
| 1.0 | 13.0 | GO:0019200 | carbohydrate kinase activity(GO:0019200) |
| 0.1 | 25.7 | GO:0005515 | protein binding(GO:0005515) |