GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
rcsB
|
rcsB | DNA-binding transcriptional activator RcsB |
|
rcsA
|
rcsA | DNA-binding transcriptional activator RcsA |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| rcsB | 0.09 | 6.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| yjbEFGH | 13.46 |
yjbG
yjbF
yjbE
yjbH
|
conserved protein predicted lipoprotein predicted protein predicted porin |
|
| yjbE | 12.22 |
yjbE
|
predicted protein |
|
| wza-wzb-wzc-wcaAB | 11.89 |
wcaA
wcaB
wzb
wzc
wza
|
predicted colanic acid biosynthesis glycosyl transferase predicted colanic acid biosynthesis acyl transferase protein-tyrosine phosphatase protein-tyrosine kinase lipoprotein required for capsular polysaccharide translocation through the outer membrane |
|
| csgDEFG | 4.62 |
csgG
csgF
csgE
csgD
|
curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 8.6 | 25.7 | GO:0045226 | extracellular polysaccharide biosynthetic process(GO:0045226) extracellular polysaccharide metabolic process(GO:0046379) |
| 3.0 | 11.9 | GO:0019344 | cysteine biosynthetic process(GO:0019344) |
| 0.7 | 4.6 | GO:0043900 | regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 13.5 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
| 0.6 | 4.6 | GO:0031246 | intrinsic component of periplasmic side of cell outer membrane(GO:0031246) |
| 0.1 | 11.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.0 | 11.9 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
| 0.2 | 4.6 | GO:0000987 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |