GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
lexA
|
lexA | LexA DNA-binding transcriptional repressor |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| lexA | -0.48 | 1.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| insK | 17.32 |
insK
|
IS150 conserved protein InsB |
|
| ydjM | 14.89 |
ydjM
|
predicted inner membrane protein regulated by LexA |
|
| recN | 14.04 |
recN
|
protein used in recombination and DNA repair |
|
| umuDC | 13.90 |
umuD
umuC
|
SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC SOS mutagenesis and repair |
|
| dinJ-yafQ | 13.16 |
dinJ
yafQ
|
DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor toxin of the YafQ-DinJ toxin-antitoxin system |
|
| hokE | 12.79 |
hokE
|
HokE |
|
| yebG | 10.88 |
yebG
|
conserved protein regulated by LexA |
|
| cho | 10.18 |
cho
|
endonuclease of nucleotide excision repair |
|
| molR_1 | 9.20 |
molR_1
|
molybdate metabolism regulator (interrupted) |
|
| sbmC | 8.96 |
sbmC
|
DNA gyrase inhibitor |
|
| symE | 6.86 |
symE
|
toxin-like protein of the SOS response |
|
| polB | 6.82 |
polB
|
DNA polymerase II |
|
| yafNOP | 6.33 |
yafN
yafO
yafP
|
antitoxin of the YafO-YafN toxin-antitoxin system ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system predicted acyltransferase with acyl-CoA N-acyltransferase domain |
|
| phr | 6.31 |
phr
|
deoxyribodipyrimidine photolyase (photoreactivation) |
|
| dinQ | 5.22 |
dinQ
|
toxic inner membrane peptide DinQ |
|
| dinB-yafNOP | 5.13 |
yafN
yafO
yafP
dinB
|
antitoxin of the YafO-YafN toxin-antitoxin system ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system predicted acyltransferase with acyl-CoA N-acyltransferase domain DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) |
|
| uvrYC | 4.62 |
uvrC
uvrY
|
excinuclease ABC, subunit C; repair of UV damage to DNA UvrY transcriptional regulator |
|
| uvrC | 4.44 |
uvrC
|
excinuclease ABC, subunit C; repair of UV damage to DNA |
|
| sulA | 4.36 |
sulA
|
SOS cell division inhibitor |
|
| tisB | 4.34 |
tisB
|
toxic peptide TisB |
|
| uvrB | 4.24 |
uvrB
|
DNA repair; excision nuclease subunit B |
|
| dinD | 4.22 |
dinD
|
DNA-damage-inducible protein |
|
| ssb | 3.36 |
ssb
|
ssDNA-binding protein |
|
| ptrA | 0.43 |
ptrA
|
protease III |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.8 | 19.0 | GO:0000731 | DNA synthesis involved in DNA repair(GO:0000731) DNA biosynthetic process(GO:0071897) |
| 3.3 | 13.2 | GO:0043624 | translational termination(GO:0006415) cellular protein complex disassembly(GO:0043624) negative regulation of DNA-templated transcription, initiation(GO:2000143) |
| 3.0 | 9.0 | GO:0043462 | regulation of ATPase activity(GO:0043462) negative regulation of DNA-dependent DNA replication(GO:2000104) |
| 2.7 | 19.2 | GO:0090305 | nucleic acid phosphodiester bond hydrolysis(GO:0090305) |
| 2.3 | 42.0 | GO:0009432 | SOS response(GO:0009432) |
| 0.3 | 6.3 | GO:0044092 | negative regulation of molecular function(GO:0044092) |
| 0.1 | 4.2 | GO:0009314 | response to radiation(GO:0009314) |
| 0.1 | 6.3 | GO:0036211 | cellular protein modification process(GO:0006464) protein modification process(GO:0036211) |
| 0.0 | 5.6 | GO:0006974 | cellular response to DNA damage stimulus(GO:0006974) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.6 | 13.9 | GO:0042575 | DNA polymerase complex(GO:0042575) |
| 3.1 | 15.6 | GO:0009380 | excinuclease repair complex(GO:0009380) |
| 0.0 | 20.7 | GO:0016020 | membrane(GO:0016020) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.2 | 25.8 | GO:0003887 | DNA-directed DNA polymerase activity(GO:0003887) DNA polymerase activity(GO:0034061) |
| 3.0 | 9.0 | GO:0060590 | ATPase regulator activity(GO:0060590) |
| 2.2 | 13.2 | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters(GO:0016894) |
| 2.0 | 10.2 | GO:0004520 | endodeoxyribonuclease activity(GO:0004520) |
| 1.1 | 4.3 | GO:0005216 | ion channel activity(GO:0005216) |
| 0.8 | 4.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.6 | 6.3 | GO:0004521 | endoribonuclease activity(GO:0004521) |
| 0.6 | 3.4 | GO:0008047 | enzyme activator activity(GO:0008047) |
| 0.1 | 6.3 | GO:0016830 | carbon-carbon lyase activity(GO:0016830) |