GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
nanR
|
nanR | NanR DNA-binding transcriptional dual regulator |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| nanA | 66.95 |
nanA
|
N-acetylneuraminate lyase |
|
| nanATEK-yhcH | 58.32 |
nanA
nanK
nanE
nanT
yhcH
|
N-acetylneuraminate lyase N-acetylmannosamine kinase predicted N-acetylmannosamine-6-phosphate epimerase N-acetylneuraminate:H+ symporter conserved protein |
|
| yjhBC | 30.17 |
yjhC
yjhB
|
KpLE2 phage-like element; predicted oxidoreductase putative transport protein, major facilitator superfamily |
|
| nanCMS | 18.61 |
nanC
nanM
nanS
|
N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase probable 9-O-acetyl-N-acetylneuraminate esterase |
|
| nanCM | 18.09 |
nanC
nanM
|
N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 31.3 | 125.3 | GO:0019262 | N-acetylneuraminate metabolic process(GO:0006054) N-acetylneuraminate catabolic process(GO:0019262) |
| 5.0 | 30.2 | GO:0015992 | hydrogen transport(GO:0006818) proton transport(GO:0015992) |
| 3.3 | 36.7 | GO:0015772 | oligosaccharide transport(GO:0015772) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.6 | 36.7 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
| 0.3 | 58.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 30.2 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 67.0 | GO:0005829 | cytosol(GO:0005829) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 31.7 | 95.0 | GO:0015136 | sialic acid transmembrane transporter activity(GO:0015136) |
| 8.4 | 67.0 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.7 | 30.2 | GO:0005342 | organic acid transmembrane transporter activity(GO:0005342) carboxylic acid transmembrane transporter activity(GO:0046943) |