GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
nac
|
nac | Nac DNA-binding transcriptional dual regulator |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| nac | 0.73 | 1.5e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| serA | 8.64 |
|
|
|
| gltBDF | 7.39 |
gltB
gltD
gltF
|
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
|
| gdhA | 6.50 |
gdhA
|
glutamate dehydrogenase |
|
| nupC | 4.66 |
nupC
|
nucleoside:H+ symporter NupC |
|
| asnC-mioC-mnmG | 2.88 |
mioC
mnmG
asnC
|
flavoprotein involved in biotin synthesis protein involved in modification of U34 in tRNA AsnC DNA-binding transcriptional dual regulator |
|
| asnC-mioC | 1.44 |
mioC
asnC
|
flavoprotein involved in biotin synthesis AsnC DNA-binding transcriptional dual regulator |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 7.4 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 1.1 | 6.5 | GO:0006536 | glutamate metabolic process(GO:0006536) |
| 1.0 | 2.9 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
| 0.9 | 4.7 | GO:0015858 | nucleoside transport(GO:0015858) |
| 0.2 | 1.4 | GO:0009102 | biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 10.8 | GO:0005829 | cytosol(GO:0005829) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 13.9 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
| 0.9 | 4.7 | GO:0015932 | nucleoside transmembrane transporter activity(GO:0005337) nucleobase-containing compound transmembrane transporter activity(GO:0015932) |
| 0.2 | 4.3 | GO:0010181 | FMN binding(GO:0010181) |