GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
cysB
|
cysB | CysB transcriptional dual regulator |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| cysB | 0.72 | 2.5e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| cysJIH | 48.52 |
cysI
cysH
cysJ
|
sulfite reductase, hemoprotein subunit 3'-phospho-adenylylsulfate reductase sulfite reductase, flavoprotein subunit |
|
| cysDNC | 47.87 |
cysD
cysN
cysC
|
sulfate adenylyltransferase, CysD subunit sulfate adenylyltransferase, CysN subunit adenylylsulfate kinase |
|
| cysPUWAM | 47.76 |
cysU
cysM
cysW
cysA
cysP
|
sulfate / thiosulfate ABC transporter - membrane subunit cysteine synthase B sulfate / thiosulfate ABC transporter - membrane subunit sulfate / thiosulfate ABC transporter - ATP binding subunit sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP |
|
| cysK | 30.83 |
cysK
|
O-acetylserine sulfhydrylase A |
|
| tauABCD | 22.35 |
tauB
tauC
tauA
tauD
|
taurine ABC transporter - ATP binding subunit taurine ABC transporter - membrane subunit taurine ABC transporter - periplasmic binding protein taurine dioxygenase |
|
| tcyP | 20.00 |
tcyP
|
cystine / cysteine:cation symporter |
|
| yciW | 13.56 |
yciW
|
predicted oxidoreductase |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 26.2 | 78.6 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
| 5.0 | 20.0 | GO:0000101 | sulfur amino acid transport(GO:0000101) |
| 3.7 | 11.2 | GO:0042908 | cellular response to sulfate starvation(GO:0009970) xenobiotic transport(GO:0042908) |
| 2.5 | 96.4 | GO:0006790 | sulfur compound metabolic process(GO:0006790) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 59.0 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
| 0.8 | 79.4 | GO:0043234 | protein complex(GO:0043234) |
| 0.1 | 20.0 | GO:0005886 | plasma membrane(GO:0005886) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 15.7 | 78.6 | GO:0080146 | L-cysteine desulfhydrase activity(GO:0080146) |
| 7.4 | 22.3 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 6.7 | 20.0 | GO:0005416 | cation:amino acid symporter activity(GO:0005416) |
| 5.3 | 47.9 | GO:0070566 | adenylyltransferase activity(GO:0070566) |
| 4.9 | 48.5 | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671) |