GSE67402: E.coli regulatory changes under long-term starvation
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
evgA
|
evgA | EvgA transcriptional activator |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| evgA | -0.70 | 4.5e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| emrKY | 17.46 |
emrY
emrK
|
EmrKY multidrug efflux pump - membrane subunit EmrKY-TolC multidrug efflux pump - membrane fusion protein |
|
| yfdX-frc-oxc-yfdVE | 16.86 |
frc
yfdE
yfdV
yfdX
oxc
|
formyl-CoA transferase acetyl-CoA:oxalate CoA-transferase putative transport protein, auxin efflux carrier family predicted protein oxalyl-CoA decarboxylase |
|
| frc | 15.68 |
frc
|
formyl-CoA transferase |
|
| safA-ydeO | 10.50 |
ydeO
safA
|
YdeO DNA-binding transcriptional dual regulator two-component system connector protein |
|
| yegRZ | 5.47 |
yegR
yegZ
|
predicted protein predicted protein fragment |
|
| acrD | 2.03 |
acrD
|
AcrAD-TolC multidrug efflux pump - permease subunit |
|
| gadE-mdtEF | 1.63 |
mdtF
mdtE
gadE
|
MdtEF-TolC multidrug efflux pump - permease subunit MdtEF-TolC multidrug efflux pump - membrane fusion protein GadE DNA-binding transcriptional activator |
|
| ydeP | 0.31 |
ydeP
|
acid resistance protein |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 6.5 | 32.5 | GO:0071468 | cellular response to acidic pH(GO:0071468) |
| 0.6 | 19.1 | GO:0046677 | response to antibiotic(GO:0046677) |
| 0.4 | 2.0 | GO:0006855 | drug transmembrane transport(GO:0006855) |
| 0.2 | 10.5 | GO:1902680 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 48.5 | GO:0005886 | plasma membrane(GO:0005886) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 10.8 | 32.5 | GO:0008410 | CoA-transferase activity(GO:0008410) |
| 0.7 | 2.0 | GO:0015307 | drug:proton antiporter activity(GO:0015307) |
| 0.2 | 1.6 | GO:0015238 | drug transmembrane transporter activity(GO:0015238) |
| 0.1 | 10.5 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 17.5 | GO:0005215 | transporter activity(GO:0005215) |