GSE67402: E.coli regulatory changes under long-term starvation
Gene Symbol | Gene ID | Gene Info |
---|---|---|
leuO
|
leuO | LeuO DNA-binding transcriptional dual regulator |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
leuO | -0.40 | 3.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
leuL | 2.64 |
leuL
|
leu operon leader peptide |
|
casABCDE12 | 1.78 |
casE
casD
casA
casC
casB
cas1
cas2
|
crRNA endonuclease Cascade subunit D Cascade subunit A Cascade subunit C Cascade subunit B multifunctional nuclease Cas1 Cas2 protein |
|
bglG | 1.24 |
bglG
|
BglG transcriptional antiterminator |
|
yjjQ-bglJ | 1.08 |
bglJ
yjjQ
|
BglJ DNA-binding transcriptional regulator YjjQ DNA-binding transcriptional repressor |
|
leuLABCD | 1.01 |
leuD
leuB
leuC
leuA
leuL
|
LeuD 3-isopropylmalate dehydrogenase LeuC 2-isopropylmalate synthase leu operon leader peptide |
|
cadC | 0.90 |
cadC
|
CadC DNA-binding transcriptional activator |
|
leuO | 0.21 |
leuO
|
LeuO DNA-binding transcriptional dual regulator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 3.6 | GO:0031556 | leucine metabolic process(GO:0006551) leucine biosynthetic process(GO:0009098) transcriptional attenuation by ribosome(GO:0031556) |
0.4 | 1.8 | GO:0009607 | defense response(GO:0006952) response to biotic stimulus(GO:0009607) response to virus(GO:0009615) response to external biotic stimulus(GO:0043207) response to other organism(GO:0051707) RNA phosphodiester bond hydrolysis(GO:0090501) |
0.3 | 1.1 | GO:1901654 | response to methylglyoxal(GO:0051595) response to ketone(GO:1901654) |
0.0 | 0.9 | GO:0045893 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0044445 | cytosolic part(GO:0044445) |
0.0 | 1.8 | GO:0043234 | protein complex(GO:0043234) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.8 | GO:0016889 | crossover junction endodeoxyribonuclease activity(GO:0008821) endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889) |
0.3 | 1.0 | GO:0046912 | acetyl-CoA C-acyltransferase activity(GO:0003988) transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912) |
0.0 | 1.2 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 1.1 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |