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GSE67402: E.coli regulatory changes under long-term starvation
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Results for CusR
Z-value: 0.73
Transcription factors associated with CusR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
cusR
|
cusR | CusR transcriptional activator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| cusR | 0.96 | 5.9e-16 | Click! |
Activity profile of CusR motif
Sorted Z-values of CusR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| cusCFBA | 21.45 |
cusA
cusC
cusB
cusF
|
copper / silver exporter - membrane subunit copper / silver exporter - outer membrane porin copper / silver exporter - membrane fusion protein copper / silver exporter - periplasmic binding protein and metallochaperone |
|
| cusRS | 9.13 |
cusS
cusR
|
CusS sensory histidine kinase CusR transcriptional activator |
|
| cyoABCDE | 6.86 |
cyoA
cyoC
cyoB
cyoE
cyoD
|
cytochrome bo terminal oxidase subunit II cytochrome bo terminal oxidase subunit III cytochrome bo terminal oxidase subunit I heme O synthase cytochrome bo terminal oxidase subunit IV |
Network of associatons between targets according to the STRING database.
First level regulatory network of CusR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 10.2 | 30.6 | GO:0010272 | response to silver ion(GO:0010272) |
| 1.7 | 6.9 | GO:0019646 | aerobic electron transport chain(GO:0019646) hydrogen ion transmembrane transport(GO:1902600) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 6.9 | GO:0070069 | cytochrome complex(GO:0070069) |
| 0.4 | 21.4 | GO:0009279 | cell outer membrane(GO:0009279) |
| 0.0 | 9.1 | GO:0016021 | integral component of membrane(GO:0016021) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.4 | 21.4 | GO:0016530 | metallochaperone activity(GO:0016530) |
| 3.0 | 9.1 | GO:0009927 | histidine phosphotransfer kinase activity(GO:0009927) |
| 1.7 | 6.9 | GO:0048039 | prenyltransferase activity(GO:0004659) ubiquinone binding(GO:0048039) |