ISMARA results: NorR

Project

GSE67402: E.coli regulatory changes under long-term starvation

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Results for NorR

Z-value: 0.38

Transcription factors associated with NorR

Gene Symbol	Gene ID	Gene Info
norR RegulonDB EcoCyc	norR	NorR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
norR		0.28	1.6e-01	Click!

Activity profile of NorR motif

Sorted Z-values of NorR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
norR Show fit	6.34		norR RegulonDB EcoCyc Show fit	NorR DNA-binding transcriptional dual regulator
norVW Show fit	0.52		norW RegulonDB EcoCyc Show fit norV RegulonDB EcoCyc Show fit	NADH:flavorubredoxin reductase flavorubredoxin

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Network of associatons between targets according to the STRING database.

First level regulatory network of NorR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	6.3	GO:0031334	positive regulation of protein complex assembly(GO:0031334) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.2	0.5	GO:0046210	nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.1	6.3	GO:0001158	bacterial-type RNA polymerase enhancer sequence-specific DNA binding(GO:0001150) enhancer sequence-specific DNA binding(GO:0001158) enhancer binding(GO:0035326)
0.0	0.5	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)

Showing 1 to 2 of 2 entries