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GSE80451: E.coli grown aerobically and anaerobically

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ISMARA results GSE80451: E.coli grown aerobically and anaerobically

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
Sigma38 5.30
small profile
Lrp 4.08 small profile
ArgR 3.60 small profile
PurR 2.93 small profile
SoxS 2.12 small profile
Cra 1.93 small profile
Sigma32 1.79
small profile
Fis 1.74 small profile
GadX 1.68 small profile
RcsB 1.49
small profile
Fur 1.33 small profile
AllR 1.26 small profile
NanR 1.23 small profile
ModE 1.22 small profile
McbR 1.21 small profile
FadR 1.20 small profile
RstA 1.19 small profile
MntR 1.18 small profile
NsrR 1.12 small profile
IHF 1.12
small profile
ZraR 1.11 small profile
CpxR 1.09 small profile
StpA 1.08
small profile
FlhDC 1.06
small profile
LexA 1.05 small profile
PgrR 1.03 small profile
Sigma54 1.02
small profile
MetR 1.00 small profile
H-NS 0.98
small profile
GlpR 0.94 small profile
IclR 0.92 small profile
NarP 0.91 small profile
ArgP 0.89 small profile
UvrY 0.88 small profile
PrpR 0.86 small profile
YjjQ 0.86 small profile
NagC 0.85 small profile
LrhA 0.83 small profile
DeoR 0.79 small profile
AlsR 0.78 small profile
ComR 0.76 small profile
CRP 0.75 small profile
ArcA 0.73 small profile
CsgD 0.70 small profile
SoxR 0.66 small profile
Nac 0.65 small profile
MetJ 0.65 small profile
DcuR 0.63 small profile
Ada 0.63 small profile
GadE-RcsB 0.63 small profile
YdeO 0.62 small profile
AllS 0.59 small profile
GntR 0.58 small profile
BirA 0.58
small profile
Sigma24 0.56
small profile
MatA 0.56 small profile
AccB 0.55
small profile
NhaR 0.55 small profile
NtrC 0.54 small profile
NrdR 0.53 small profile
PuuR 0.53 small profile
TyrR 0.53 small profile
TrpR 0.52 small profile
MarA 0.52 small profile
Mlc 0.52 small profile
RcdA 0.51 small profile
CdaR 0.51 small profile
FliZ 0.50 small profile
CspA 0.49 small profile
PhoB 0.48 small profile
GadW 0.48 small profile
NimR 0.47 small profile
AidB 0.47
small profile
OxyR 0.46 small profile
GadE 0.46
small profile
QseB 0.46 small profile
YqjI 0.45 small profile
HdfR 0.44 small profile
FNR 0.44 small profile
PhoP 0.43 small profile
DpiA 0.42 small profile
Sigma70 0.41
small profile
Rob 0.41 small profile
UxuR 0.40 small profile
CytR 0.39 small profile
SgrR 0.39 small profile
RcsB-BglJ 0.38 small profile
EvgA 0.38 small profile
MraZ 0.36 small profile
RclR 0.36 small profile
LeuO 0.36 small profile
MtlR 0.36 small profile
RhaS 0.35 small profile
CynR 0.35 small profile
BetI 0.35 small profile
IscR 0.35 small profile
MqsA 0.35 small profile
PdhR 0.35 small profile
YehT 0.35 small profile
RcsAB 0.33
small profile
RhaR 0.33 small profile
KdpE 0.32 small profile
MlrA 0.32 small profile
HypT 0.32 small profile
TorR 0.31 small profile
YedW 0.31 small profile
CusR 0.31 small profile
MprA 0.31 small profile
Sigma28 0.30
small profile
FucR 0.30 small profile
OmpR 0.30 small profile
XylR 0.30 small profile
GatR 0.30
small profile
CueR 0.29 small profile
YqhC 0.29 small profile
NemR 0.29 small profile
Dan 0.29 small profile
AraC 0.29 small profile
CysB 0.28 small profile
RutR 0.28 small profile
AcrR 0.28 small profile
GlrR 0.28 small profile
MazE-MazF 0.28 small profile
MazE 0.28
small profile
AscG 0.27 small profile
NarL 0.27 small profile
DinJ-YafQ 0.26 small profile
RbsR 0.26 small profile
PutA 0.24
small profile
CadC 0.24 small profile
BasR 0.24 small profile
LldR 0.24 small profile
YiaJ 0.24 small profile
AsnC 0.24 small profile
CreB 0.23 small profile
EnvY 0.23 small profile
SutR 0.23 small profile
AlaS 0.23
small profile
KdgR 0.23 small profile
AtoC 0.22 small profile
FabR 0.22 small profile
MarR 0.22 small profile
PspF 0.22 small profile
Zur 0.22 small profile
RtcR 0.22 small profile
ExuR 0.21 small profile
GutM 0.21 small profile
TdcA 0.21 small profile
BolA 0.20 small profile
FhlA 0.20 small profile
HipAB 0.20
small profile
LsrR 0.20 small profile
HU 0.20
small profile
HcaR 0.20 small profile
TreR 0.20 small profile
CsiR 0.19 small profile
HipB 0.18 small profile
UlaR 0.18 small profile
MalI 0.18 small profile
SlyA 0.17 small profile
AppY 0.17 small profile
GalS 0.17 small profile
GalR 0.17 small profile
AdiY 0.16 small profile
DicA 0.16 small profile
SdiA 0.16 small profile
MurR 0.16 small profile
RelB 0.15 small profile
IdnR 0.14 small profile
UhpA 0.13 small profile
DnaA 0.13 small profile
YpdB 0.13 small profile
BluR 0.12 small profile
MalT 0.12 small profile
PaaX 0.12 small profile
MelR 0.12 small profile
AgaR 0.12 small profile
YeiL 0.11 small profile
DhaR 0.11 small profile
Sigma19 0.11
small profile
EbgR 0.10 small profile
ZntR 0.10 small profile
LysR 0.10 small profile
CaiF 0.10 small profile
NikR 0.09 small profile
UidR 0.09 small profile
FeaR 0.09 small profile
Cbl 0.09 small profile
EnvR 0.08 small profile
ChbR 0.08 small profile
DsdC 0.08 small profile
PepA 0.07
small profile
GcvA 0.07 small profile
BaeR 0.07 small profile
CecR 0.07 small profile
ArsR 0.07 small profile
MngR 0.07 small profile
GlcC 0.06 small profile
NadR 0.06 small profile
LacI 0.06 small profile
HyfR 0.05 small profile
IlvY 0.05 small profile
MhpR 0.03 small profile
NorR 0.02 small profile

All samples sorted alphabetically

Sample name Condition Replicate/Batch
Aerobic_1_1
Aerobic_2_1
Aerobic_3_1
Anaerobic_1_1
Anaerobic_3_1