Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for RcsAB

Z-value: 0.33

Transcription factors associated with RcsAB

Gene Symbol Gene ID Gene Info
rcsB
rcsB DNA-binding transcriptional activator RcsB
rcsA
rcsA DNA-binding transcriptional activator RcsA

Activity profile of RcsAB motif

Sorted Z-values of RcsAB motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
csgDEFG 0.55
csgG
csgF
csgE
csgD
curli secretion channel
curli assembly component
curli transport specificity factor
CsgD DNA-binding transcriptional dual regulator
flhDC 0.47
flhC
flhD
FlhC transcriptional dual regulator
FlhD transcriptional dual regulator
wza-wzb-wzc-wcaAB 0.33
wcaA
wcaB
wzb
wzc
wza
predicted colanic acid biosynthesis glycosyl transferase
predicted colanic acid biosynthesis acyl transferase
protein-tyrosine phosphatase
protein-tyrosine kinase
lipoprotein required for capsular polysaccharide translocation through the outer membrane

Network of associatons between targets according to the STRING database.

First level regulatory network of RcsAB

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0019344 cysteine biosynthetic process(GO:0019344)
0.1 0.6 GO:0043900 regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0031246 intrinsic component of periplasmic side of cell outer membrane(GO:0031246)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.6 GO:0001159 bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)