Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for ArgR
Z-value: 3.60
Transcription factors associated with ArgR
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| argR | -0.97 | 5.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| artJ Show fit | 25.78 |
L-arginine ABC transporter - periplasmic binding protein |
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| argI Show fit | 19.27 |
ornithine carbamoyltransferase chain I |
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| argA Show fit | 16.86 |
N-acetylglutamate synthase |
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| argCBH Show fit | 16.21 |
argininosuccinate lyase acetylglutamate kinase N-acetylglutamylphosphate reductase |
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| argG Show fit | 10.73 |
argininosuccinate synthase |
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| argD Show fit | 9.07 |
N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase |
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| artPIQM Show fit | 8.08 |
L-arginine ABC transporter - membrane subunit L-arginine ABC transporter - ATP binding subunit periplasmic binding protein ArtI L-arginine ABC transporter - membrane subunit |
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| carAB Show fit | 6.69 |
carbamoyl phosphate synthetase, β chain carbamoyl phosphate synthetase, α chain |
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| gltBDF Show fit | 6.06 |
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
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| hisJQMP Show fit | 3.20 |
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit histidine ABC transporter - periplasmic binding protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of ArgR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.9 | 43.8 | GO:0006526 | arginine biosynthetic process(GO:0006526) |
| 9.3 | 37.1 | GO:1903400 | L-arginine import(GO:0043091) L-amino acid import(GO:0043092) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine import into cell(GO:1902765) L-arginine transmembrane transport(GO:1903400) arginine transmembrane transport(GO:1903826) |
| 3.0 | 6.1 | GO:0009084 | glutamine family amino acid biosynthetic process(GO:0009084) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 35.0 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.0 | 22.0 | GO:0005737 | cytoplasm(GO:0005737) |
| 0.7 | 8.1 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
| 0.1 | 6.7 | GO:1902494 | catalytic complex(GO:1902494) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 35.7 | GO:0016597 | amino acid binding(GO:0016597) |
| 6.4 | 19.3 | GO:0016743 | carboxyl- or carbamoyltransferase activity(GO:0016743) |
| 2.8 | 16.9 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
| 5.4 | 16.2 | GO:0016842 | amidine-lyase activity(GO:0016842) |
| 0.4 | 10.7 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
| 2.7 | 8.1 | GO:0005275 | amine transmembrane transporter activity(GO:0005275) |
| 1.0 | 6.1 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
| 1.0 | 3.0 | GO:0050897 | cobalt ion binding(GO:0050897) |