ISMARA results: StpA

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GSE80451: E.coli grown aerobically and anaerobically

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Results for StpA

Z-value: 1.08

Transcription factors associated with StpA

Gene Symbol	Gene ID	Gene Info
stpA RegulonDB EcoCyc	stpA	DNA-binding transcriptional repressor StpA with RNA chaperone activity

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
stpA		0.72	1.7e-01	Click!

Activity profile of StpA motif

Sorted Z-values of StpA motif

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Promoter	Log-likelihood	Gene	Gene Info
ssrS Show fit	5.06	ssrS RegulonDB EcoCyc Show fit	6S RNA
ssrS-fau Show fit	4.71	ssrS RegulonDB EcoCyc Show fit fau RegulonDB EcoCyc Show fit	6S RNA 5-formyltetrahydrofolate cyclo-ligase
stpA Show fit	1.98	stpA RegulonDB EcoCyc Show fit	H-NS-like DNA-binding transcriptional repressor with RNA chaperone activity

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of StpA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.6	4.7	GO:0035999	tetrahydrofolate interconversion(GO:0035999)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.2	4.7	GO:0016882	cyclo-ligase activity(GO:0016882)
0.0	2.0	GO:0003677	DNA binding(GO:0003677)

Showing 1 to 2 of 2 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.6	4.7	REACTOME TRANSLATION	Genes involved in Translation

Showing 1 to 1 of 1 entries

Results for StpA

Z-value: 1.08

Transcription factors associated with StpA

Activity-expression correlation:

Activity profile of StpA motif

Sorted Z-values of StpA motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of StpA

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: