GSE80451: E.coli grown aerobically and anaerobically

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rpiR Links RegulonDB EcoCyc	rpiR	AlsR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rpiR		0.97	7.1e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
rpiR-alsBACE Show fit	3.04		rpiR Links RegulonDB EcoCyc Show fit alsE Links RegulonDB EcoCyc Show fit alsB Links RegulonDB EcoCyc Show fit alsC Links RegulonDB EcoCyc Show fit alsA Links RegulonDB EcoCyc Show fit	AlsR DNA-binding transcriptional repressor allulose-6-phosphate 3-epimerase D-allose ABC transporter - periplasmic binding protein D-allose ABC transporter - membrane subunit D-allose ABC transporter - ATP binding subunit
rpiB Show fit	2.21		rpiB Links RegulonDB EcoCyc Show fit	allose-6-phosphate isomerase / ribose-5-phosphate isomerase B

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	3.0	GO:0009052	pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.1	2.2	GO:0019320	hexose catabolic process(GO:0019320)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.0	GO:0098533	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	3.0	GO:0004750	ribulose-phosphate 3-epimerase activity(GO:0004750)
0.1	2.2	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861)