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GSE80451: E.coli grown aerobically and anaerobically

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Results for GadX

Z-value: 1.68

Transcription factors associated with GadX

Gene Symbol Gene ID Gene Info
gadX GadX DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
gadX0.961.0e-02Click!
gadW0.866.5e-02Click!

Activity profile of GadX motif

Sorted Z-values of GadX motif

Promoter Log-likelihood Transcript Gene Gene Info
hns 8.81 H-NS DNA-binding transcriptional dual regulator
slp-dctR 4.87 starvation lipoprotein
predicted DNA-binding transcriptional regulator
uspE 4.63 universal stress protein with a role cellular motility
gadBC 4.29 glutamate decarboxylase B subunit
glutamic acid:4-aminobutyrate antiporter
hdeD 2.74 acid-resistance membrane protein
ybaST 2.09 glutaminase
putative transport protein, archaeal/bacterial transporter (ABT) family
gadW 1.79 GadW DNA-binding transcriptional dual regulator
gadE 1.49 GadE DNA-binding transcriptional activator
cadBA 0.46 lysine decarboxylase 1
lysine:cadaverine antiporter
glnK-amtB 0.46 nitrogen regulatory protein GlnK
ammonia / ammonium transporter
gadAX 0.30 GadX DNA-binding transcriptional dual regulator
glutamate decarboxylase A subunit
lon 0.26 DNA-binding, ATP-dependent protease La

Network of associatons between targets according to the STRING database.

First level regulatory network of GadX

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.9 GO:0043471 regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)
1.1 4.6 GO:0045852 pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.9 4.6 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.3 5.2 GO:0009268 response to pH(GO:0009268)
0.2 0.5 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.1 0.3 GO:0006515 misfolded or incompletely synthesized protein catabolic process(GO:0006515)
0.0 2.5 GO:0006355 regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 4.9 GO:0019867 outer membrane(GO:0019867)
0.0 18.9 GO:0016020 membrane(GO:0016020)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 8.8 GO:0003681 bent DNA binding(GO:0003681)
0.3 4.8 GO:0015297 antiporter activity(GO:0015297)
0.1 0.5 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.1 0.3 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 1.5 GO:0003700 transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 1.3 GO:0003677 DNA binding(GO:0003677)
0.0 3.1 GO:0042802 identical protein binding(GO:0042802)