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GSE80451: E.coli grown aerobically and anaerobically

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Results for Sigma28

Z-value: 0.30

Transcription factors associated with Sigma28

Gene Symbol Gene ID Gene Info
fliA
fliA RNA polymerase sigma factor FliA

Activity profile of Sigma28 motif

Sorted Z-values of Sigma28 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
hemL 1.02
hemL
glutamate-1-semialdehyde aminotransferase
yhiL 0.92
yhiL
predicted protein
ynjH 0.48
ynjH
predicted protein
trg 0.27

aer 0.22
aer
aerotaxis sensor receptor, flavoprotein
oppABCDF 0.21
oppA
oppC
oppB
oppD
oppF
peptide ABC transporter - periplasmic binding protein
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
flgKL 0.19
flgK
flgL
flagellar biosynthesis, hook-filament junction protein 1
flagellar biosynthesis; hook-filament junction protein
ygbK 0.08
ygbK
conserved protein
ycgR 0.04
ycgR
molecular brake that regulates flagellar motility in response to c-di-GMP
motAB-cheAW 0.04
motA
motB
cheW
cheA
MotA protein, proton conductor component of motor; no effect on switching
MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall
CheW
CheA(S)
ppdAB-ygdB-ppdC-recC 0.02
ppdA
ppdB
ppdC
ygdB
recC
conserved protein
conserved protein
predicted protein
predicted protein
RecC

Network of associatons between targets according to the STRING database.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782)
0.1 0.2 GO:0006857 oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672)
0.0 0.2 GO:0044781 bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781)
0.0 0.1 GO:0042330 chemotaxis(GO:0006935) taxis(GO:0042330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0015198 oligopeptide transporter activity(GO:0015198) peptidoglycan transporter activity(GO:0015647) oligopeptide transmembrane transporter activity(GO:0035673)
0.1 1.0 GO:0016866 intramolecular transferase activity(GO:0016866)
0.0 0.0 GO:0030551 cyclic nucleotide binding(GO:0030551) cyclic-di-GMP binding(GO:0035438)