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GSE80451: E.coli grown aerobically and anaerobically

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Results for RutR

Z-value: 0.28

Transcription factors associated with RutR

Gene Symbol Gene ID Gene Info
rutR
rutR RutR DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rutR0.781.2e-01Click!

Activity profile of RutR motif

Sorted Z-values of RutR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
nemRA-gloA 0.46
gloA
nemA
nemR
glyoxalase I
N-ethylmaleimide reductase, FMN-linked
NemR DNA-binding transcriptional repressor
rutR 0.37
rutR
RutR DNA-binding transcriptional dual regulator
pdeR 0.23
pdeR
cyclic di-GMP phosphodiesterase
nemRA 0.17
nemA
nemR
N-ethylmaleimide reductase, FMN-linked
NemR DNA-binding transcriptional repressor
rutABCDEFG 0.07
rutC
rutB
rutA
rutG
rutF
rutE
rutD
predicted aminoacrylate peracid reductase
peroxyureidoacrylate / ureidoacrylate amido hydrolase
pyrimidine oxygenase
uracil:H+ symporter RutG
flavin reductase
predicted malonic semialdehyde reductase
predicted aminoacrylate hydrolase

Network of associatons between targets according to the STRING database.

First level regulatory network of RutR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0072491 trinitrotoluene metabolic process(GO:0018973) 2,4,6-trinitrotoluene metabolic process(GO:0018974) nitrotoluene metabolic process(GO:0019326) 2,4,6-trinitrotoluene catabolic process(GO:0046256) trinitrotoluene catabolic process(GO:0046260) nitrotoluene catabolic process(GO:0046263) toluene-containing compound metabolic process(GO:0072490) toluene-containing compound catabolic process(GO:0072491)
0.0 0.1 GO:0015855 pyrimidine nucleobase catabolic process(GO:0006208) pyrimidine nucleobase transport(GO:0015855)
0.0 0.2 GO:0043086 negative regulation of catalytic activity(GO:0043086)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0034567 chromate reductase activity(GO:0034567)
0.0 0.2 GO:0071111 cyclic-guanylate-specific phosphodiesterase activity(GO:0071111)
0.0 0.1 GO:0004497 monooxygenase activity(GO:0004497) pyrimidine nucleobase transmembrane transporter activity(GO:0005350)
0.0 0.3 GO:0000976 transcription regulatory region sequence-specific DNA binding(GO:0000976)