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GSE80451: E.coli grown aerobically and anaerobically

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Results for RstA

Z-value: 1.19

Transcription factors associated with RstA

Gene Symbol Gene ID Gene Info
rstA
rstA RstA transcriptional regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rstA0.932.3e-02Click!

Activity profile of RstA motif

Sorted Z-values of RstA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
csgDEFG 7.23
csgG
csgF
csgE
csgD
curli secretion channel
curli assembly component
curli transport specificity factor
CsgD DNA-binding transcriptional dual regulator
ompF 5.36
ompF
outer membrane porin F
asr 3.34
asr
acid shock protein

Network of associatons between targets according to the STRING database.

First level regulatory network of RstA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 7.2 GO:0043900 regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.6 5.4 GO:0006855 drug transmembrane transport(GO:0006855)
0.6 3.3 GO:0010043 response to zinc ion(GO:0010043)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 5.4 GO:0046930 pore complex(GO:0046930)
0.8 7.2 GO:0031246 intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0 3.3 GO:0042597 periplasmic space(GO:0042597)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.8 5.4 GO:0022885 bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)
0.4 7.2 GO:0000987 bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)