ISMARA results: AsnC

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for AsnC

Z-value: 0.24

Transcription factors associated with AsnC

Gene Symbol	Gene ID	Gene Info
asnC RegulonDB EcoCyc	asnC	AsnC DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
asnC		0.79	1.1e-01	Click!

Activity profile of AsnC motif

Sorted Z-values of AsnC motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
asnA Show fit	0.35		asnA RegulonDB EcoCyc Show fit	asparagine synthetase A
asnC-mioC-mnmG Show fit	0.18		mioC RegulonDB EcoCyc Show fit mnmG RegulonDB EcoCyc Show fit asnC RegulonDB EcoCyc Show fit	flavoprotein involved in biotin synthesis protein involved in modification of U34 in tRNA AsnC DNA-binding transcriptional dual regulator
asnC-mioC Show fit	0.07		mioC RegulonDB EcoCyc Show fit asnC RegulonDB EcoCyc Show fit	flavoprotein involved in biotin synthesis AsnC DNA-binding transcriptional dual regulator

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AsnC

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0006528	asparagine metabolic process(GO:0006528)
0.1	0.2	GO:0002098	tRNA wobble uridine modification(GO:0002098)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0016211	ammonia ligase activity(GO:0016211)
0.0	0.3	GO:0010181	FMN binding(GO:0010181)

Showing 1 to 2 of 2 entries