ISMARA results: TrpR

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for TrpR

Z-value: 0.52

Transcription factors associated with TrpR

Gene Symbol	Gene ID	Gene Info
trpR RegulonDB EcoCyc	trpR	TrpR transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
trpR		0.55	3.4e-01	Click!

Activity profile of TrpR motif

Sorted Z-values of TrpR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
aroL-yaiA-aroM Show fit	2.06		yaiA RegulonDB EcoCyc Show fit aroL RegulonDB EcoCyc Show fit aroM RegulonDB EcoCyc Show fit	predicted protein shikimate kinase II conserved protein
mtr Show fit	1.72		mtr RegulonDB EcoCyc Show fit	tryptohan / indole:H+ symporter Mtr
trpL Show fit	0.08		trpL RegulonDB EcoCyc Show fit	trp operon leader peptide

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.6	1.7	GO:0015827	tryptophan transport(GO:0015827)
0.1	0.8	GO:0009073	aromatic amino acid family biosynthetic process(GO:0009073)
0.0	0.1	GO:0090357	regulation of cellular amino acid metabolic process(GO:0006521) tryptophan metabolic process(GO:0006568) indolalkylamine metabolic process(GO:0006586) regulation of cellular amine metabolic process(GO:0033238) indole-containing compound metabolic process(GO:0042430) regulation of tryptophan metabolic process(GO:0090357)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.1	GO:0016773	phosphotransferase activity, alcohol group as acceptor(GO:0016773)
0.6	1.7	GO:0015196	L-tryptophan transmembrane transporter activity(GO:0015196)

Showing 1 to 2 of 2 entries