Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for PgrR

Z-value: 1.03

Transcription factors associated with PgrR

Gene Symbol Gene ID Gene Info
pgrR
pgrR PgrR DNA-binding transcriptional repressor

Activity profile of PgrR motif

Sorted Z-values of PgrR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
tyrR 2.59
tyrR
TyrR DNA-binding transcriptional dual regulator
ycjXF-tyrR 2.37
tyrR
ycjX
ycjF
TyrR DNA-binding transcriptional dual regulator
conserved protein
conserved inner membrane protein
ycjG 1.92
ycjG
L-Ala-D/L-Glu epimerase
ycjY-ymjDC-mpaA 1.39
ymjD
mpaA
ycjY
ymjC
small protein
murein tripeptide amidase A
predicted hydrolase
predicted oxidoreductase
ycjY 1.32
ycjY
predicted hydrolase

Network of associatons between targets according to the STRING database.

First level regulatory network of PgrR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.4 GO:0009253 aminoglycan catabolic process(GO:0006026) glycosaminoglycan catabolic process(GO:0006027) peptidoglycan catabolic process(GO:0009253) peptide catabolic process(GO:0043171)
0.1 5.0 GO:0045892 negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.1 1.3 GO:0051301 cell division(GO:0051301)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 6.4 GO:0005737 cytoplasm(GO:0005737)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.9 GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives(GO:0016855)
0.3 1.4 GO:0008235 metalloexopeptidase activity(GO:0008235)
0.1 5.0 GO:0005524 ATP binding(GO:0005524)