ISMARA results: CynR

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for CynR

Z-value: 0.35

Transcription factors associated with CynR

Gene Symbol	Gene ID	Gene Info
cynR RegulonDB EcoCyc	cynR	CynR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cynR		0.63	2.5e-01	Click!

Activity profile of CynR motif

Sorted Z-values of CynR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
cynR Show fit	0.49		cynR RegulonDB EcoCyc Show fit	CynR DNA-binding transcriptional dual regulator
cynTSX Show fit	0.43		cynT RegulonDB EcoCyc Show fit cynS RegulonDB EcoCyc Show fit cynX RegulonDB EcoCyc Show fit	carbonic anhydrase 1 cyanase cyanate transporter
cynTS Show fit	0.22		cynT RegulonDB EcoCyc Show fit cynS RegulonDB EcoCyc Show fit	carbonic anhydrase 1 cyanase

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Network of associatons between targets according to the STRING database.

First level regulatory network of CynR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	GO:0044270	cellular nitrogen compound catabolic process(GO:0044270)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.7	GO:0004089	carbonate dehydratase activity(GO:0004089)

Showing 1 to 1 of 1 entries