ISMARA results: YedW

Project

GSE80451: E.coli grown aerobically and anaerobically

Navigation

Downloads

Results for YedW

Z-value: 0.31

Transcription factors associated with YedW

Gene Symbol	Gene ID	Gene Info
yedW RegulonDB EcoCyc	yedW	YedW DNA-binding response regulator in two-component system with YedV

Activity profile of YedW motif

Sorted Z-values of YedW motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
cusRS Show fit	0.34		cusS RegulonDB EcoCyc Show fit cusR RegulonDB EcoCyc Show fit	CusS sensory histidine kinase CusR transcriptional activator
cusCFBA Show fit	0.24		cusA RegulonDB EcoCyc Show fit cusC RegulonDB EcoCyc Show fit cusB RegulonDB EcoCyc Show fit cusF RegulonDB EcoCyc Show fit	copper / silver exporter - membrane subunit copper / silver exporter - outer membrane porin copper / silver exporter - membrane fusion protein copper / silver exporter - periplasmic binding protein and metallochaperone
yedX Show fit	0.22		yedX RegulonDB EcoCyc Show fit	hydroxyisourate hydrolase / transthyretin-related protein

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of YedW

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.6	GO:0010272	response to silver ion(GO:0010272)
0.0	0.2	GO:0006144	purine nucleobase metabolic process(GO:0006144)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0000155	phosphorelay sensor kinase activity(GO:0000155) protein histidine kinase activity(GO:0004673)
0.1	0.2	GO:0016530	metallochaperone activity(GO:0016530)
0.1	0.2	GO:0016812	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)

Showing 1 to 3 of 3 entries