Project

GSE80451: E.coli grown aerobically and anaerobically

Navigation
Downloads

Results for PhoP

Z-value: 0.43

Transcription factors associated with PhoP

Gene Symbol Gene ID Gene Info
phoP
phoP PhoP

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
phoP0.019.9e-01Click!

Activity profile of PhoP motif

Sorted Z-values of PhoP motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
rstAB 0.70
rstA
rstB
RstA transcriptional regulator
RstB sensory histidine kinase
treR 0.47
treR
TreR DNA-binding transcriptional repressor
mgrR 0.42
mgrR
MgrR
mgtLA 0.40
mgtA
mgtL
Mg2+ / Ni2+ transporting ATPase
predicted leader peptide
ompT 0.24
ompT
outer membrane protease VII (outer membrane protein 3b)
metBL 0.23
metB
metL
O-succinylhomoserine(thiol)-lyase / O-succinylhomoserine lyase
aspartate kinase / homoserine dehydrogenase
argD 0.21
argD
N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase
mgrB 0.12
mgrB
negative feedback regulator of the PhoQP system
gadE 0.10
gadE
GadE DNA-binding transcriptional activator
cysB 0.10
cysB
CysB transcriptional dual regulator
acrAB 0.07
acrB
acrA
AcrAB-TolC multidrug efflux pump - permease subunit
AcrAB-TolC multidrug efflux pump - membrane fusion protein
hdeAB-yhiD 0.07
yhiD
hdeB
hdeA
inner membrane protein YhiD
HdeB monomer
HdeA monomer, chaperone active form
dcuD 0.05
dcuD
putative transport protein, C4-dicarboxylate uptake C family
safA-ydeO 0.05
ydeO
safA
YdeO DNA-binding transcriptional dual regulator
two-component system connector protein
tolC-ygiABC 0.04
ygiC
ygiB
ygiA
tolC
predicted enzyme with ATPase activity
conserved outer membrane protein
predicted protein
TolC outer membrane channel
yneM 0.02
yneM
small membrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of PhoP

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0018106 peptidyl-histidine phosphorylation(GO:0018106) peptidyl-histidine modification(GO:0018202)
0.1 0.4 GO:0031556 transcriptional attenuation by ribosome(GO:0031556)
0.1 0.2 GO:0009090 homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092)
0.1 0.2 GO:0009089 lysine biosynthetic process via diaminopimelate(GO:0009089)
0.0 0.1 GO:0032026 response to magnesium ion(GO:0032026) regulation of response to stimulus(GO:0048583)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0043227 membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231)
0.0 0.2 GO:0031230 intrinsic component of cell outer membrane(GO:0031230)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0019202 aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202)
0.1 0.4 GO:0019829 cation-transporting ATPase activity(GO:0019829)
0.1 0.2 GO:0003992 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity(GO:0003992)
0.0 0.1 GO:0015307 drug:proton antiporter activity(GO:0015307)
0.0 0.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.7 GO:0000155 phosphorelay sensor kinase activity(GO:0000155) protein histidine kinase activity(GO:0004673)
0.0 0.1 GO:0051087 chaperone binding(GO:0051087)