Project
GSE80451: E.coli grown aerobically and anaerobically
Navigation
Downloads
Results for Sigma38
Z-value: 5.30
Transcription factors associated with Sigma38
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| rpoS | -0.92 | 2.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| astCADBE Show fit | 14.68 |
arginine succinyltransferase succinylarginine dihydrolase succinylornithine transaminase aldehyde dehydrogenase succinylglutamate desuccinylase |
||
| osmB Show fit | 14.17 |
OsmB osmotically inducible lipoprotein |
||
| cfa Show fit | 11.58 |
cyclopropane fatty acyl phospholipid synthase |
||
| bolA Show fit | 11.36 |
BolA DNA-binding transcriptional dual regulator |
||
| glgS Show fit | 9.97 |
surface composition regulator |
||
| pfkB Show fit | 9.69 |
6-phosphofructokinase II |
||
| ytfK Show fit | 9.56 |
conserved protein |
||
| blc Show fit | 9.09 |
outer membrane lipoprotein (lipocalin) |
||
| ihfA Show fit | 8.84 |
integration host factor (IHF), α subunit |
||
| uspB Show fit | 8.12 |
predicted universal stress (ethanol tolerance) protein B |
Network of associatons between targets according to the STRING database.
First level regulatory network of Sigma38
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 17.6 | GO:0006096 | glycolytic process(GO:0006096) |
| 4.9 | 14.7 | GO:0006527 | succinate metabolic process(GO:0006105) arginine catabolic process(GO:0006527) |
| 4.6 | 13.8 | GO:0045912 | negative regulation of carbohydrate metabolic process(GO:0045912) |
| 2.0 | 12.2 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 4.0 | 12.0 | GO:0097305 | response to alcohol(GO:0097305) |
| 2.4 | 11.8 | GO:0071978 | bacterial-type flagellum-dependent swarming motility(GO:0071978) |
| 0.8 | 11.6 | GO:0030258 | lipid modification(GO:0030258) |
| 1.8 | 10.9 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
| 5.0 | 10.0 | GO:1900231 | regulation of single-species biofilm formation on inanimate substrate(GO:1900231) negative regulation of single-species biofilm formation on inanimate substrate(GO:1900232) |
| 1.6 | 9.5 | GO:0009396 | folic acid-containing compound biosynthetic process(GO:0009396) pteridine-containing compound biosynthetic process(GO:0042559) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 80.2 | GO:0005829 | cytosol(GO:0005829) |
| 0.6 | 7.0 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
| 1.9 | 5.6 | GO:0005950 | anthranilate synthase complex(GO:0005950) |
| 0.4 | 4.9 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
| 0.0 | 1.7 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.3 | 0.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 16.9 | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity(GO:0008757) |
| 4.2 | 16.6 | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813) |
| 1.6 | 10.9 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
| 3.2 | 9.7 | GO:0008443 | phosphofructokinase activity(GO:0008443) |
| 1.7 | 8.7 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
| 0.5 | 8.7 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
| 0.3 | 8.0 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
| 2.5 | 7.6 | GO:0015927 | trehalase activity(GO:0015927) |
| 1.5 | 7.3 | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655) |
| 2.3 | 6.9 | GO:0004784 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 3.3 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 4.0 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 1.1 | 3.3 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |