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GSE80451: E.coli grown aerobically and anaerobically

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Results for CytR

Z-value: 0.39

Transcription factors associated with CytR

Gene Symbol Gene ID Gene Info
cytR
cytR CytR DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
cytR-0.751.4e-01Click!

Activity profile of CytR motif

Sorted Z-values of CytR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
deoCABD 0.73
deoA
deoB
deoC
deoD
thymidine phosphorylase / uracil phosphorylase
phosphopentomutase
deoxyribose-phosphate aldolase
purine nucleoside phosphorylase
nupC 0.69
nupC
nucleoside:H+ symporter NupC
nupG 0.55
nupG
nucleoside:H+ symporter NupG
ycdZ 0.24
ycdZ
predicted inner membrane protein
udp 0.23
udp
uridine phosphorylase
cdd 0.15
cdd
cytidine deaminase

Network of associatons between targets according to the STRING database.

First level regulatory network of CytR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0009264 deoxyribonucleotide catabolic process(GO:0009264)
0.2 0.7 GO:0015858 nucleoside transport(GO:0015858)
0.1 0.2 GO:0006244 pyrimidine nucleotide catabolic process(GO:0006244) nucleoside monophosphate catabolic process(GO:0009125) pyrimidine nucleoside monophosphate catabolic process(GO:0009131) ribonucleoside monophosphate catabolic process(GO:0009158) pyrimidine ribonucleoside monophosphate metabolic process(GO:0009173) pyrimidine ribonucleoside monophosphate catabolic process(GO:0009175) pyrimidine ribonucleotide metabolic process(GO:0009218) pyrimidine ribonucleotide catabolic process(GO:0009222) ribonucleotide catabolic process(GO:0009261) UMP metabolic process(GO:0046049) UMP catabolic process(GO:0046050)
0.1 0.2 GO:0046131 pyrimidine ribonucleoside metabolic process(GO:0046131) pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0015932 nucleoside transmembrane transporter activity(GO:0005337) nucleobase-containing compound transmembrane transporter activity(GO:0015932)
0.1 0.7 GO:0004645 phosphorylase activity(GO:0004645) intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.2 GO:0030955 potassium ion binding(GO:0030955)
0.0 0.2 GO:0019239 deaminase activity(GO:0019239)