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GSE80451: E.coli grown aerobically and anaerobically

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Results for NagC

Z-value: 0.85

Transcription factors associated with NagC

Gene Symbol Gene ID Gene Info
nagC NagC DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nagC0.999.5e-04Click!

Activity profile of NagC motif

Sorted Z-values of NagC motif

Promoter Log-likelihood Transcript Gene Gene Info
nanCM 2.38 N-acetylneuraminic acid outer membrane channel
N-acetylneuraminate mutarotase
nanCMS 1.97 N-acetylneuraminic acid outer membrane channel
N-acetylneuraminate mutarotase
probable 9-O-acetyl-N-acetylneuraminate esterase
nagE 1.92 N-acetylglucosamine PTS permease
glmUS 1.74 fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase
L-glutamine:D-fructose-6-phosphate aminotransferase
manXYZ 1.51 mannose PTS permease - ManX subunit
mannose PTS permease - ManY subunit
mannose PTS permease - ManZ subunit
nagBAC-umpH 1.40 glucosamine-6-phosphate deaminase
NagC DNA-binding transcriptional dual regulator
UMP phosphatase
N-acetylglucosamine-6-phosphate deacetylase
ptsHI-crr 1.13 PTS enzyme I
HPr
Enzyme IIAGlc; Crr
ydeP 0.43 acid resistance protein
dinI 0.28 DNA damage-inducible protein I
chbBCARFG 0.21 chito-oligosaccharide mono-deacetylase
monoacetylchitobiose-6-phosphate hydrolase
chitobiose PTS permease - ChbC subunit
chitobiose PTS permease - ChbB subunit
chitobiose PTS permease - ChbA subunit
ChbR DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of NagC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0009225 nucleotide-sugar metabolic process(GO:0009225) nucleotide-sugar biosynthetic process(GO:0009226)
0.5 1.5 GO:0015755 fructose transport(GO:0015755)
0.5 1.9 GO:0009254 peptidoglycan turnover(GO:0009254)
0.4 1.1 GO:0045912 carbohydrate utilization(GO:0009758) regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) negative regulation of carbohydrate metabolic process(GO:0045912)
0.4 3.7 GO:0015772 oligosaccharide transport(GO:0015772)
0.0 0.4 GO:0010447 response to acidic pH(GO:0010447)
0.0 0.2 GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system(GO:0009401)
0.0 0.3 GO:0009432 SOS response(GO:0009432)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 4.4 GO:0045203 integral component of cell outer membrane(GO:0045203)
0.1 1.1 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.0 3.6 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.4 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.6 1.9 GO:0019534 toxin transporter activity(GO:0019534)
0.5 1.4 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.3 1.7 GO:0070569 uridylyltransferase activity(GO:0070569)
0.2 1.1 GO:0008047 enzyme activator activity(GO:0008047)
0.1 1.2 GO:0015149 hexose transmembrane transporter activity(GO:0015149)
0.1 0.2 GO:0008706 6-phospho-beta-glucosidase activity(GO:0008706)
0.0 0.3 GO:0019899 enzyme binding(GO:0019899)