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GSE80451: E.coli grown aerobically and anaerobically

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Results for BasR

Z-value: 0.24

Transcription factors associated with BasR

Gene Symbol Gene ID Gene Info
basR
basR BasR transcriptional regulator

Activity profile of BasR motif

Sorted Z-values of BasR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
fimB 0.19
fimB
regulator for fimA
csgDEFG 0.14
csgG
csgF
csgE
csgD
curli secretion channel
curli assembly component
curli transport specificity factor
CsgD DNA-binding transcriptional dual regulator
qseBC 0.10
qseC
qseB
QseC sensory histidine kinase
QseB transcriptional activator
dgkA 0.09
dgkA
diacylglycerol kinase
cspI 0.06
cspI
Qin prophage; cold shock protein

Network of associatons between targets according to the STRING database.

First level regulatory network of BasR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0015074 DNA integration(GO:0015074)
0.0 0.1 GO:1900190 regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.0 0.1 GO:0046486 glycerophospholipid metabolic process(GO:0006650) glycerolipid biosynthetic process(GO:0045017) glycerophospholipid biosynthetic process(GO:0046474) glycerolipid metabolic process(GO:0046486)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031246 intrinsic component of periplasmic side of cell outer membrane(GO:0031246)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION Genes involved in Platelet activation, signaling and aggregation