ISMARA results: LldR

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for LldR

Z-value: 0.24

Transcription factors associated with LldR

Gene Symbol	Gene ID	Gene Info
lldR RegulonDB EcoCyc	lldR	LldR transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
lldR		0.88	4.9e-02	Click!

Activity profile of LldR motif

Sorted Z-values of LldR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
lldPRD Show fit	0.38		lldP RegulonDB EcoCyc Show fit lldR RegulonDB EcoCyc Show fit lldD RegulonDB EcoCyc Show fit	(R)-lactate / (S)-lactate / glycolate:H+ symporter LldP LldR transcriptional dual regulator L-lactate dehydrogenase

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Network of associatons between targets according to the STRING database.

First level regulatory network of LldR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0042355	fucose metabolic process(GO:0006004) response to nutrient(GO:0007584) fucose catabolic process(GO:0019317) L-fucose metabolic process(GO:0042354) L-fucose catabolic process(GO:0042355)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0043879	glycolate transmembrane transporter activity(GO:0043879)

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