ISMARA results: NrdR

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for NrdR

Z-value: 0.53

Transcription factors associated with NrdR

Gene Symbol	Gene ID	Gene Info
nrdR RegulonDB EcoCyc	nrdR	NrdR transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nrdR		-0.79	1.1e-01	Click!

Activity profile of NrdR motif

Sorted Z-values of NrdR motif

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Promoter	Log-likelihood	Gene	Gene Info
nrdHIEF Show fit	1.66	nrdH RegulonDB EcoCyc Show fit nrdI RegulonDB EcoCyc Show fit nrdE RegulonDB EcoCyc Show fit nrdF RegulonDB EcoCyc Show fit	glutaredoxin-like protein flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase ribonucleoside-diphosphate reductase 2, α subunit ribonucleoside-diphosphate reductase 2, β subunit
nrdDG Show fit	0.75	nrdD RegulonDB EcoCyc Show fit nrdG RegulonDB EcoCyc Show fit	anaerobic ribonucleoside-triphosphate reductase anaerobic ribonucleoside-triphosphate reductase-activating protein
nrdAB-yfaE Show fit	0.01	nrdA RegulonDB EcoCyc Show fit nrdB RegulonDB EcoCyc Show fit yfaE RegulonDB EcoCyc Show fit	ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of NrdR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.4	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.7	GO:1990204	oxidoreductase complex(GO:1990204)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.4	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)

Showing 1 to 1 of 1 entries

Results for NrdR

Z-value: 0.53

Transcription factors associated with NrdR

Activity-expression correlation:

Activity profile of NrdR motif

Sorted Z-values of NrdR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of NrdR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: