ISMARA results: BetI

Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for BetI

Z-value: 0.35

Transcription factors associated with BetI

Gene Symbol	Gene ID	Gene Info
betI RegulonDB EcoCyc	betI	BetI DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
betI		0.97	6.9e-03	Click!

Activity profile of BetI motif

Sorted Z-values of BetI motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
betIBA Show fit	0.65		betB RegulonDB EcoCyc Show fit betI RegulonDB EcoCyc Show fit betA RegulonDB EcoCyc Show fit	betaine aldehyde dehydrogenase BetI DNA-binding transcriptional repressor choline dehydrogenase
betT Show fit	0.47		betT RegulonDB EcoCyc Show fit	choline:H⁺ symporter

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Network of associatons between targets according to the STRING database.

First level regulatory network of BetI

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.7	GO:0006577	amino-acid betaine metabolic process(GO:0006577)
0.1	0.5	GO:0015696	ammonium transport(GO:0015696)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	GO:0004029	aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.1	0.5	GO:0008519	ammonium transmembrane transporter activity(GO:0008519) alcohol transmembrane transporter activity(GO:0015665)

Showing 1 to 2 of 2 entries