Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for XylR
Z-value: 0.30
Transcription factors associated with XylR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
xylR
|
xylR | XylR transcriptional dual regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| xylR | 0.94 | 1.8e-02 | Click! |
Activity profile of XylR motif
Sorted Z-values of XylR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| xylAB | 0.44 |
xylA
xylB
|
xylose isomerase xylulokinase |
|
| xylFGHR | 0.28 |
xylH
xylR
xylG
xylF
|
xylose ABC transporter - membrane subunit XylR transcriptional dual regulator xylose ABC transporter - ATP binding subunit xylose ABC transporter - periplasmic binding protein |
|
| araC | 0.12 |
araC
|
AraC DNA-binding transcriptional dual regulator |
Network of associatons between targets according to the STRING database.
First level regulatory network of XylR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0019321 | pentose metabolic process(GO:0019321) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0048029 | pentose transmembrane transporter activity(GO:0015146) monosaccharide binding(GO:0048029) |
| 0.0 | 0.4 | GO:0019200 | carbohydrate kinase activity(GO:0019200) |