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GSE80451: E.coli grown aerobically and anaerobically

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Results for HU

Z-value: 0.20

Transcription factors associated with HU

Gene Symbol Gene ID Gene Info
hupA
hupA DNA-binding protein HU-alpha
hupB
hupB DNA-binding protein HU-beta

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hupA-0.791.1e-01Click!
hupB-0.266.7e-01Click!

Activity profile of HU motif

Sorted Z-values of HU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
mtr 0.59
mtr
tryptohan / indole:H+ symporter Mtr
galET 0.37
galT
galE
galactose-1-phosphate uridylyltransferase
UDP-glucose 4-epimerase
galE 0.27
galE
UDP-glucose 4-epimerase

Network of associatons between targets according to the STRING database.

First level regulatory network of HU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0015827 tryptophan transport(GO:0015827)
0.1 0.6 GO:0033499 galactose catabolic process via UDP-galactose(GO:0033499)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0015196 L-tryptophan transmembrane transporter activity(GO:0015196)
0.1 0.6 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates