Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for NarP
Z-value: 0.91
Transcription factors associated with NarP
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| narP | -0.99 | 7.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| fdnGHI Show fit | 1.49 |
formate dehydrogenase N, β subunit formate dehydrogenase N, γ subunit formate dehydrogenase N, α subunit |
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| ytfE Show fit | 1.43 |
iron-sulfur cluster repair protein YtfE |
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| norVW Show fit | 1.27 |
NADH:flavorubredoxin reductase flavorubredoxin |
||
| hcp-hcr Show fit | 0.89 |
NADH oxidoreductase hybrid-cluster protein |
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| nrfABCDEFG Show fit | 0.86 |
activator of formate-dependent nitrite reductase complex NrfG formate dependent nitrite reductase - NrfD subunit formate-dependent nitrite reductase; possible assembly function formate-dependent nitrite reductase - penta-heme cytochrome c formate-dependent nitrite reductase, 4Fe-4S subunit formate dependent nitrite reductase - NrfA subunit |
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| hyaABCDEF Show fit | 0.57 |
hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA |
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| ydhYVWXUT Show fit | 0.37 |
predicted 4Fe-4S ferredoxin-type protein predicted 4Fe-4S ferredoxin-type protein predicted protein predicted oxidoreductase predicted cytochrome conserved protein |
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| fdhF Show fit | 0.35 |
formate dehydrogenase H |
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| nirBDC-cysG Show fit | 0.35 |
nitrite reductase, small subunit siroheme synthase subunit nitrite transporter NirC nitrite reductase, large subunit |
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| yeaR-yoaG Show fit | 0.09 |
predicted protein conserved protein |
Network of associatons between targets according to the STRING database.
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.2 | GO:0046209 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) |
| 0.5 | 1.8 | GO:0015942 | formate metabolic process(GO:0015942) |
| 0.4 | 1.4 | GO:0030091 | protein repair(GO:0030091) |
| 0.3 | 0.9 | GO:0017006 | protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063) |
| 0.1 | 0.6 | GO:0016485 | fermentation(GO:0006113) protein processing(GO:0016485) |
| 0.1 | 0.3 | GO:0015707 | nitrite transport(GO:0015707) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
| 0.0 | 1.2 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
| 0.1 | 0.7 | GO:0031233 | intrinsic component of external side of plasma membrane(GO:0031233) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.4 | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661) |
| 0.3 | 1.9 | GO:0030151 | molybdenum ion binding(GO:0030151) |
| 0.0 | 1.4 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.6 | 0.6 | GO:0005048 | signal sequence binding(GO:0005048) |