Project

GSE80451: E.coli grown aerobically and anaerobically

Navigation
Downloads

Results for NarP

Z-value: 0.91

Transcription factors associated with NarP

Gene Symbol Gene ID Gene Info
narP
narP NarP transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
narP-0.997.7e-04Click!

Activity profile of NarP motif

Sorted Z-values of NarP motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
fdnGHI 1.49
fdnH
fdnI
fdnG
formate dehydrogenase N, β subunit
formate dehydrogenase N, γ subunit
formate dehydrogenase N, α subunit
ytfE 1.43
ytfE
iron-sulfur cluster repair protein YtfE
norVW 1.27
norW
norV
NADH:flavorubredoxin reductase
flavorubredoxin
hcp-hcr 0.89
hcr
hcp
NADH oxidoreductase
hybrid-cluster protein
nrfABCDEFG 0.86
nrfF
nrfG
nrfD
nrfE
nrfB
nrfC
nrfA
activator of formate-dependent nitrite reductase complex
NrfG
formate dependent nitrite reductase - NrfD subunit
formate-dependent nitrite reductase; possible assembly function
formate-dependent nitrite reductase - penta-heme cytochrome c
formate-dependent nitrite reductase, 4Fe-4S subunit
formate dependent nitrite reductase - NrfA subunit
hyaABCDEF 0.57
hyaB
hyaC
hyaA
hyaF
hyaD
hyaE
hydrogenase 1, large subunit
hydrogenase 1, b-type cytochrome subunit
hydrogenase 1, small subunit
protein involved in nickel incorporation into hydrogenase 1 proteins
protein involved in processing of HyaA and HyaB proteins
protein involved in quality control of HyaA
ydhYVWXUT 0.37
ydhY
ydhX
ydhW
ydhV
ydhU
ydhT
predicted 4Fe-4S ferredoxin-type protein
predicted 4Fe-4S ferredoxin-type protein
predicted protein
predicted oxidoreductase
predicted cytochrome
conserved protein
fdhF 0.35
fdhF
formate dehydrogenase H
nirBDC-cysG 0.35
nirD
cysG
nirC
nirB
nitrite reductase, small subunit
siroheme synthase subunit
nitrite transporter NirC
nitrite reductase, large subunit
yeaR-yoaG 0.09
yoaG
yeaR
predicted protein
conserved protein
napFDAGHBC-ccmABCDEFGH 0.09
napG
napF
napD
napC
ccmH
napA
ccmE
ccmD
ccmG
ccmF
ccmA
ccmC
ccmB
napH
napB
ferredoxin-type protein
ferredoxin-type protein
signal peptide-binding chaperone for NapA
periplasmic nitrate reductase, cytochrome c protein
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH
large subunit of periplasmic nitrate reductase, molybdoprotein
membrane anchored periplasmic heme chaperone CcmE
ABC complex for formation and release of holoCcmE - membrane subunit CcmD
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG
holocytochrome c synthetase - CcmF subunit
ABC complex for formation and release of holoCcmE - ATP binding subunit
ABC complex for formation and release of holoCcmE - membrane subunit CcmC
ABC complex for formation and release of holoCcmE - membrane subunit CcmB
ferredoxin-type protein
subunit of periplasmic nitrate reductase, cytochrome c550 protein

Network of associatons between targets according to the STRING database.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.2 GO:0046209 nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210)
0.5 1.8 GO:0015942 formate metabolic process(GO:0015942)
0.4 1.4 GO:0030091 protein repair(GO:0030091)
0.3 0.9 GO:0017006 protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063)
0.1 0.3 GO:0015707 nitrite transport(GO:0015707)
0.1 0.6 GO:0016485 fermentation(GO:0006113) protein processing(GO:0016485)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.5 GO:0071575 integral component of external side of plasma membrane(GO:0071575)
0.1 0.7 GO:0031233 intrinsic component of external side of plasma membrane(GO:0031233)
0.0 1.2 GO:0030288 outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 0.6 GO:0005048 signal sequence binding(GO:0005048)
0.3 1.9 GO:0030151 molybdenum ion binding(GO:0030151)
0.3 3.4 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.0 1.4 GO:0005506 iron ion binding(GO:0005506)