GSE80451: E.coli grown aerobically and anaerobically
Gene Symbol | Gene ID | Gene Info |
---|---|---|
rpoH
|
rpoH | RNA polymerase sigma factor RpoH |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rpoH | -0.82 | 8.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
dnaK-tpke11-dnaJ | 6.98 |
dnaK
dnaJ
tpke11
|
chaperone protein DnaK chaperone protein DnaJ Tpke11 |
|
rrsA-ileT-alaT-rrlA-rrfA | 6.39 |
rrlA
ileT
alaT
rrsA
rrfA
|
23S ribosomal RNA (rrlA) tRNAileT tRNAalaT 16S ribosomal RNA (rrsA) 5S ribosomal RNA (rrfA) |
|
rrsE-gltV-rrlE-rrfE | 6.27 |
rrlE
gltV
rrsE
rrfE
|
rrlE 23S ribosomal RNA tRNAgltV rrsE 16S ribosomal RNA rrfE 5S ribosomal RNA |
|
rrsC-gltU-rrlC-rrfC | 6.20 |
rrlC
gltU
rrfC
rrsC
|
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF | 6.19 |
rrlD
ileU
alaU
thrV
rrfF
rrsD
rrfD
|
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
|
rrsB-gltT-rrlB-rrfB | 6.14 |
rrlB
gltT
rrfB
rrsB
|
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
|
rrsG-gltW-rrlG-rrfG | 6.12 |
rrlG
gltW
rrfG
rrsG
|
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
|
rrsH-ileV-alaV-rrlH-rrfH | 5.94 |
rrlH
rrfH
rrsH
ileV
alaV
|
rrlH 23S ribosomal RNA rrfH 5S ribosomal RNA rrsH 16S ribosomal RNA tRNAileV tRNAalaV |
|
htpG | 3.91 |
htpG
|
molecular chaperone, HSP90 family |
|
groSL | 3.09 |
groS
groL
|
GroES cochaperonin GroEL chaperonin |
|
cra | 2.59 |
cra
|
Cra DNA-binding transcriptional dual regulator |
|
rdgB-yggW | 2.25 |
yggW
rdgB
|
predicted oxidoreductase dITP/XTP pyrophosphatase |
|
ibpAB | 1.86 |
ibpA
ibpB
|
small heat shock protein IbpA small heat shock protein IbpB |
|
ppiD | 1.85 |
ppiD
|
periplasmic folding chaperone |
|
creABC | 1.43 |
creA
creB
creC
|
conserved protein CreB transcriptional regulator CreC |
|
grpE | 1.35 |
grpE
|
nucleotide exchange factor |
|
pncC | 1.24 |
pncC
|
NMN aminohydrolase |
|
yjaZ | 0.98 |
yjaZ
|
conserved protein |
|
yrfG-hslR | 0.93 |
hslR
yrfG
|
heat shock protein Hsp15 involved in ribosome recycling purine nucleotidase |
|
nfuA | 0.92 |
nfuA
|
iron-sulfur cluster scaffold protein |
|
mutM | 0.80 |
mutM
|
formamidopyrimidine DNA glycosylase |
|
glnS | 0.80 |
glnS
|
glutamine-tRNA ligase |
|
ybfE | 0.77 |
ybfE
|
LexA-regulated protein |
|
ileS-lspA-fkpB-ispH | 0.76 |
ileS
ispH
fkpB
lspA
|
isoleucine-tRNA ligase 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase peptidyl-prolyl cis-trans isomerase prolipoprotein signal peptidase II |
|
yehR | 0.72 |
yehR
|
conserved protein |
|
htgA | 0.67 |
htgA
|
predicted DNA-binding transcriptional regulator |
|
slt | 0.65 |
slt
|
soluble lytic murein transglycosylase |
|
can | 0.60 |
can
|
carbonic anhydrase 2 |
|
mngAB | 0.59 |
mngA
mngB
|
2-O-α-mannosyl-D-glycerate PTS permease α-mannosidase |
|
yjhBC | 0.41 |
yjhC
yjhB
|
KpLE2 phage-like element; predicted oxidoreductase putative transport protein, major facilitator superfamily |
|
mhpT | 0.36 |
mhpT
|
3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter |
|
yhdN-zntR | 0.33 |
zntR
yhdN
|
ZntR transcriptional activator conserved protein |
|
lon | 0.25 |
lon
|
DNA-binding, ATP-dependent protease La |
|
metA | 0.17 |
metA
|
homoserine O-succinyltransferase |
|
holC-valS | 0.17 |
valS
holC
|
valine-tRNA ligase DNA polymerase III, χ subunit |
|
clpB | 0.09 |
clpB
|
ClpB chaperone |
|
yceJI | 0.09 |
yceJ
yceI
|
predicted cytochrome b561 predicted protein |
|
lapAB | 0.07 |
lapA
lapB
|
lipopolysaccharide assembly protein LapA lipopolysaccharide assembly protein LapB |
|
yccE | 0.02 |
yccE
|
predicted protein |
|
ydeO | 0.00 |
ydeO
|
YdeO DNA-binding transcriptional dual regulator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.4 | 10.2 | GO:0006986 | response to unfolded protein(GO:0006986) |
0.4 | 1.9 | GO:1990169 | stress response to copper ion(GO:1990169) |
0.4 | 1.4 | GO:0018202 | response to nutrient(GO:0007584) peptidyl-histidine phosphorylation(GO:0018106) peptidyl-histidine modification(GO:0018202) |
0.3 | 0.9 | GO:0015976 | carbon utilization(GO:0015976) |
0.3 | 2.3 | GO:1901292 | nucleoside phosphate catabolic process(GO:1901292) |
0.3 | 0.8 | GO:0097304 | lipoprotein biosynthetic process via signal peptide cleavage(GO:0097304) |
0.2 | 4.6 | GO:0006457 | protein folding(GO:0006457) |
0.2 | 0.8 | GO:0006284 | base-excision repair(GO:0006284) |
0.1 | 0.6 | GO:1901656 | glycoside transport(GO:1901656) |
0.1 | 0.4 | GO:0042908 | xenobiotic transport(GO:0042908) |
0.1 | 0.4 | GO:0015992 | hydrogen transport(GO:0006818) proton transport(GO:0015992) |
0.1 | 0.2 | GO:0030174 | regulation of translational fidelity(GO:0006450) regulation of DNA-dependent DNA replication initiation(GO:0030174) positive regulation of translational fidelity(GO:0045903) |
0.1 | 0.8 | GO:0006418 | tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039) |
0.0 | 0.7 | GO:0006096 | glycolytic process(GO:0006096) |
0.0 | 0.5 | GO:0016311 | dephosphorylation(GO:0016311) |
0.0 | 0.0 | GO:0009253 | aminoglycan catabolic process(GO:0006026) glycosaminoglycan catabolic process(GO:0006027) peptidoglycan catabolic process(GO:0009253) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | GO:0009274 | peptidoglycan-based cell wall(GO:0009274) |
0.1 | 0.2 | GO:0042575 | DNA polymerase complex(GO:0042575) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 10.0 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.8 | 2.3 | GO:0004551 | nucleotide diphosphatase activity(GO:0004551) |
0.5 | 1.4 | GO:0060590 | ATPase regulator activity(GO:0060590) |
0.3 | 0.9 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) purine nucleosidase activity(GO:0008477) |
0.3 | 0.8 | GO:0019104 | DNA N-glycosylase activity(GO:0019104) |
0.3 | 0.8 | GO:0042380 | hydroxymethylbutenyl pyrophosphate reductase activity(GO:0042380) |
0.2 | 0.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.1 | 1.8 | GO:0000987 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.1 | 1.0 | GO:0004812 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |
0.0 | 0.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 0.6 | GO:0090563 | protein-phosphocysteine-sugar phosphotransferase activity(GO:0090563) |
0.0 | 0.6 | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811) |
0.0 | 0.2 | GO:0016748 | succinyltransferase activity(GO:0016748) |
0.0 | 0.4 | GO:1901618 | organic hydroxy compound transmembrane transporter activity(GO:1901618) |
0.0 | 0.9 | GO:0051539 | 4 iron, 4 sulfur cluster binding(GO:0051539) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |