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GSE80451: E.coli grown aerobically and anaerobically

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Results for Sigma32

Z-value: 1.79

Transcription factors associated with Sigma32

Gene Symbol Gene ID Gene Info
rpoH RNA polymerase sigma factor RpoH

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rpoH-0.828.9e-02Click!

Activity profile of Sigma32 motif

Sorted Z-values of Sigma32 motif

Promoter Log-likelihood Transcript Gene Gene Info
dnaK-tpke11-dnaJ 6.98 chaperone protein DnaK
chaperone protein DnaJ
Tpke11
rrsA-ileT-alaT-rrlA-rrfA 6.39 23S ribosomal RNA (rrlA)
tRNAileT
tRNAalaT
16S ribosomal RNA (rrsA)
5S ribosomal RNA (rrfA)
rrsE-gltV-rrlE-rrfE 6.27 rrlE 23S ribosomal RNA
tRNAgltV
rrsE 16S ribosomal RNA
rrfE 5S ribosomal RNA
rrsC-gltU-rrlC-rrfC 6.20 rrlC 23S ribosomal RNA
tRNAgltU
rrfC 5S ribosomal RNA
rrsC 16S ribosomal RNA
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF 6.19 rrlD 23S ribosomal RNA
tRNAileU
tRNAalaU
tRNAthrV
rrfF 5S ribosomal RNA
rrsD 16S ribosomal RNA
rrfD 5S ribosomal RNA
rrsB-gltT-rrlB-rrfB 6.14 rrlB 23S ribosomal RNA
tRNAgltT
rrfB 5S ribosomal RNA
rrsB 16S ribosomal RNA
rrsG-gltW-rrlG-rrfG 6.12 rrlG 23S ribosomal RNA
tRNAgltW
rrfG 5S ribosomal RNA
rrsG 16S ribosomal RNA
rrsH-ileV-alaV-rrlH-rrfH 5.94 rrlH 23S ribosomal RNA
rrfH 5S ribosomal RNA
rrsH 16S ribosomal RNA
tRNAileV
tRNAalaV
htpG 3.91 molecular chaperone, HSP90 family
groSL 3.09 GroES cochaperonin
GroEL chaperonin
cra 2.59 Cra DNA-binding transcriptional dual regulator
rdgB-yggW 2.25 predicted oxidoreductase
dITP/XTP pyrophosphatase
ibpAB 1.86 small heat shock protein IbpA
small heat shock protein IbpB
ppiD 1.85 periplasmic folding chaperone
creABC 1.43 conserved protein
CreB transcriptional regulator
CreC
grpE 1.35 nucleotide exchange factor
pncC 1.24 NMN aminohydrolase
yjaZ 0.98 conserved protein
yrfG-hslR 0.93 heat shock protein Hsp15 involved in ribosome recycling
purine nucleotidase
nfuA 0.92 iron-sulfur cluster scaffold protein
mutM 0.80 formamidopyrimidine DNA glycosylase
glnS 0.80 glutamine-tRNA ligase
ybfE 0.77 LexA-regulated protein
ileS-lspA-fkpB-ispH 0.76 isoleucine-tRNA ligase
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
peptidyl-prolyl cis-trans isomerase
prolipoprotein signal peptidase II
yehR 0.72 conserved protein
htgA 0.67 predicted DNA-binding transcriptional regulator
slt 0.65 soluble lytic murein transglycosylase
can 0.60 carbonic anhydrase 2
mngAB 0.59 2-O-α-mannosyl-D-glycerate PTS permease
α-mannosidase
yjhBC 0.41 KpLE2 phage-like element; predicted oxidoreductase
putative transport protein, major facilitator superfamily
mhpT 0.36 3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter
yhdN-zntR 0.33 ZntR transcriptional activator
conserved protein
lon 0.25 DNA-binding, ATP-dependent protease La
metA 0.17 homoserine O-succinyltransferase
holC-valS 0.17 valine-tRNA ligase
DNA polymerase III, χ subunit
clpB 0.09 ClpB chaperone
yceJI 0.09 predicted cytochrome b561
predicted protein
lapAB 0.07 lipopolysaccharide assembly protein LapA
lipopolysaccharide assembly protein LapB
yccE 0.02 predicted protein
ydeO 0.00 YdeO DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma32

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.4 10.2 GO:0006986 response to unfolded protein(GO:0006986)
0.4 1.9 GO:1990169 stress response to copper ion(GO:1990169)
0.4 1.4 GO:0018202 response to nutrient(GO:0007584) peptidyl-histidine phosphorylation(GO:0018106) peptidyl-histidine modification(GO:0018202)
0.3 0.9 GO:0015976 carbon utilization(GO:0015976)
0.3 2.3 GO:1901292 nucleoside phosphate catabolic process(GO:1901292)
0.3 0.8 GO:0097304 lipoprotein biosynthetic process via signal peptide cleavage(GO:0097304)
0.2 4.6 GO:0006457 protein folding(GO:0006457)
0.2 0.8 GO:0006284 base-excision repair(GO:0006284)
0.1 0.6 GO:1901656 glycoside transport(GO:1901656)
0.1 0.4 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.4 GO:0015992 hydrogen transport(GO:0006818) proton transport(GO:0015992)
0.1 0.2 GO:0030174 regulation of translational fidelity(GO:0006450) regulation of DNA-dependent DNA replication initiation(GO:0030174) positive regulation of translational fidelity(GO:0045903)
0.1 0.8 GO:0006418 tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039)
0.0 0.7 GO:0006096 glycolytic process(GO:0006096)
0.0 0.5 GO:0016311 dephosphorylation(GO:0016311)
0.0 0.0 GO:0009253 aminoglycan catabolic process(GO:0006026) glycosaminoglycan catabolic process(GO:0006027) peptidoglycan catabolic process(GO:0009253)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0009274 peptidoglycan-based cell wall(GO:0009274)
0.1 0.2 GO:0042575 DNA polymerase complex(GO:0042575)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.5 10.0 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.8 2.3 GO:0004551 nucleotide diphosphatase activity(GO:0004551)
0.5 1.4 GO:0060590 ATPase regulator activity(GO:0060590)
0.3 0.9 GO:0008253 5'-nucleotidase activity(GO:0008253) purine nucleosidase activity(GO:0008477)
0.3 0.8 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.3 0.8 GO:0042380 hydroxymethylbutenyl pyrophosphate reductase activity(GO:0042380)
0.2 0.6 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 1.8 GO:0000987 bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.1 1.0 GO:0004812 aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876)
0.0 0.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.6 GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity(GO:0090563)
0.0 0.6 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 0.2 GO:0016748 succinyltransferase activity(GO:0016748)
0.0 0.4 GO:1901618 organic hydroxy compound transmembrane transporter activity(GO:1901618)
0.0 0.9 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.9 PID CMYB PATHWAY C-MYB transcription factor network