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GSE80451: E.coli grown aerobically and anaerobically

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Results for ModE

Z-value: 1.22

Transcription factors associated with ModE

Gene Symbol Gene ID Gene Info
modE ModE transcriptional dual regulator

Activity profile of ModE motif

Sorted Z-values of ModE motif

Promoter Log-likelihood Transcript Gene Gene Info
moaABCDE 3.98 molybdopterin synthase large subunit
molybdopterin synthase small subunit
cyclic pyranopterin monophosphate synthase
MoaB protein
GTP 3',8'-cyclase
deoCABD 3.50 thymidine phosphorylase / uracil phosphorylase
phosphopentomutase
deoxyribose-phosphate aldolase
purine nucleoside phosphorylase
napFDAGHBC-ccmABCDEFGH 2.02 ferredoxin-type protein
ferredoxin-type protein
signal peptide-binding chaperone for NapA
periplasmic nitrate reductase, cytochrome c protein
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH
large subunit of periplasmic nitrate reductase, molybdoprotein
membrane anchored periplasmic heme chaperone CcmE
ABC complex for formation and release of holoCcmE - membrane subunit CcmD
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG
holocytochrome c synthetase - CcmF subunit
ABC complex for formation and release of holoCcmE - ATP binding subunit
ABC complex for formation and release of holoCcmE - membrane subunit CcmC
ABC complex for formation and release of holoCcmE - membrane subunit CcmB
ferredoxin-type protein
subunit of periplasmic nitrate reductase, cytochrome c550 protein
hycABCDEFGHI 1.38 hydrogenase 3, membrane subunit
hydrogenase 3, large subunit
formate hydrogenlyase complex iron-sulfur protein
hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
regulator of the transcriptional regulator FhlA
hydrogenase 3, Fe-S subunit
hydrogenase 3, membrane subunit
protein required for maturation of hydrogenase 3
hydrogenase 3 maturation protease
oppABCDF 1.34 peptide ABC transporter - periplasmic binding protein
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
narXL 1.01 NarL
NarX
dmsABC 0.65 dimethyl sulfoxide reductase, chain A
dimethyl sulfoxide reductase, chain B
dimethyl sulfoxide reductase, chain C

Network of associatons between targets according to the STRING database.

First level regulatory network of ModE

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 4.0 GO:0046039 GTP metabolic process(GO:0046039) prosthetic group metabolic process(GO:0051189)
1.2 3.5 GO:0009264 deoxyribonucleotide catabolic process(GO:0009264)
0.7 2.0 GO:0018063 heme transport(GO:0015886) protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063) regulation of protein localization(GO:0032880) regulation of protein transport(GO:0051223) regulation of establishment of protein localization(GO:0070201)
0.4 1.3 GO:0006857 oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672)
0.3 1.0 GO:1902170 nitrogen cycle metabolic process(GO:0071941) cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170)
0.3 1.4 GO:0016485 protein processing(GO:0016485)
0.0 0.7 GO:0009061 anaerobic respiration(GO:0009061)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.2 0.7 GO:0031237 intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.1 1.4 GO:1990204 oxidoreductase complex(GO:1990204)
0.0 8.5 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 3.5 GO:0004645 phosphorylase activity(GO:0004645) intramolecular transferase activity, phosphotransferases(GO:0016868)
0.7 2.0 GO:0005048 signal sequence binding(GO:0005048)
0.7 4.0 GO:0016783 sulfurtransferase activity(GO:0016783)
0.4 1.3 GO:0015647 oligopeptide transporter activity(GO:0015198) peptidoglycan transporter activity(GO:0015647) oligopeptide transmembrane transporter activity(GO:0035673)
0.1 1.4 GO:0016151 nickel cation binding(GO:0016151)
0.1 1.0 GO:0004721 phosphoprotein phosphatase activity(GO:0004721)
0.0 0.7 GO:0009055 electron carrier activity(GO:0009055)