Results for YBL054W
Z-value: 0.90
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| YFR055W Show fit | 11.02 |
Putative cystathionine beta-lyase; involved in copper ion homeostasis and sulfur metabolism; null mutant displays increased levels of spontaneous Rad52p foci; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner |
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| YFR056C Show fit | 9.37 |
Dubious open reading frame unlikely to encode a protein based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YFR055W |
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| YOR096W Show fit | 5.93 |
Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins |
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| YER102W Show fit | 5.79 |
Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein |
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| YDR345C Show fit | 5.47 |
Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions |
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| YDR385W Show fit | 5.30 |
Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin |
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| YMR246W Show fit | 5.12 |
Long chain fatty acyl-CoA synthetase, regulates protein modification during growth in the presence of ethanol, functions to incorporate palmitic acid into phospholipids and neutral lipids |
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| YLR154W-B Show fit | 4.52 |
Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand |
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| YLR154C Show fit | 4.52 |
Ribonuclease H2 subunit, required for RNase H2 activity |
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| YLR154W-A Show fit | 4.50 |
Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand |
Network of associatons between targets according to the STRING database.
First level regulatory network of YBL054W
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 40.7 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
| 0.4 | 39.4 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.5 | 24.0 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
| 0.7 | 23.2 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.6 | 18.4 | GO:0000472 | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000472) |
| 0.3 | 15.5 | GO:0006364 | rRNA processing(GO:0006364) |
| 0.7 | 11.8 | GO:0042790 | transcription of nuclear large rRNA transcript from RNA polymerase I promoter(GO:0042790) |
| 0.6 | 11.6 | GO:0006407 | rRNA export from nucleus(GO:0006407) rRNA transport(GO:0051029) |
| 3.7 | 11.0 | GO:0000098 | sulfur amino acid catabolic process(GO:0000098) |
| 0.5 | 10.1 | GO:0030488 | tRNA methylation(GO:0030488) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 33.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.4 | 32.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.6 | 25.6 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
| 0.7 | 21.8 | GO:0032040 | small-subunit processome(GO:0032040) |
| 0.5 | 20.8 | GO:0030684 | preribosome(GO:0030684) |
| 0.4 | 14.2 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 1.0 | 13.8 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
| 0.8 | 8.0 | GO:0030688 | preribosome, small subunit precursor(GO:0030688) |
| 0.1 | 7.7 | GO:0005840 | ribosome(GO:0005840) |
| 1.9 | 5.8 | GO:0032299 | ribonuclease H2 complex(GO:0032299) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 54.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.5 | 21.4 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.1 | 20.5 | GO:0003723 | RNA binding(GO:0003723) |
| 0.8 | 15.0 | GO:0030515 | snoRNA binding(GO:0030515) |
| 1.0 | 13.8 | GO:0001054 | RNA polymerase I activity(GO:0001054) |
| 0.3 | 11.4 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 1.6 | 9.5 | GO:0016846 | carbon-sulfur lyase activity(GO:0016846) |
| 0.6 | 9.2 | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters(GO:0016891) |
| 0.1 | 9.2 | GO:0003924 | GTPase activity(GO:0003924) |
| 1.5 | 5.8 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.9 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.3 | 1.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.2 | 1.1 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 0.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
| 0.0 | 0.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 10.0 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.5 | 3.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.3 | 2.0 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
| 0.3 | 1.7 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.2 | 1.4 | REACTOME AXON GUIDANCE | Genes involved in Axon guidance |
| 0.5 | 1.1 | REACTOME DOWNREGULATION OF ERBB2 ERBB3 SIGNALING | Genes involved in Downregulation of ERBB2:ERBB3 signaling |
| 0.5 | 1.0 | REACTOME SCF BETA TRCP MEDIATED DEGRADATION OF EMI1 | Genes involved in SCF-beta-TrCP mediated degradation of Emi1 |
| 0.3 | 0.9 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
| 0.2 | 0.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 0.4 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |