GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Runx2 | rn6_v1_chr9_+_18564927_18564927 | 0.50 | 2.0e-21 | Click! |
Bcl11a | rn6_v1_chr14_+_108826831_108826939 | 0.09 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_206342066 Show fit | 127.91 |
ENSRNOT00000026556
|
protein tyrosine phosphatase, non-receptor type 22 |
|
chr15_+_32763067 Show fit | 117.83 |
ENSRNOT00000011998
|
|
|
chr3_+_19772056 Show fit | 107.96 |
ENSRNOT00000044455
|
|
|
chr10_-_70871066 Show fit | 107.30 |
ENSRNOT00000015139
|
C-C motif chemokine ligand 3 |
|
chr15_-_35417273 Show fit | 102.44 |
ENSRNOT00000083961
ENSRNOT00000041430 |
granzyme B |
|
chr3_-_91217491 Show fit | 101.04 |
ENSRNOT00000006115
|
recombination activating 1 |
|
chr11_+_86092468 Show fit | 99.49 |
ENSRNOT00000057971
|
lambda-chain C1-region-like |
|
chr4_+_70572942 Show fit | 99.37 |
ENSRNOT00000051964
|
|
|
chr3_+_18970574 Show fit | 90.25 |
ENSRNOT00000088394
|
|
|
chrX_-_71616997 Show fit | 87.74 |
ENSRNOT00000004406
|
C-X-C motif chemokine receptor 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 360.4 | GO:0016485 | protein processing(GO:0016485) |
68.9 | 206.7 | GO:0071663 | granzyme B production(GO:0071613) regulation of granzyme B production(GO:0071661) positive regulation of granzyme B production(GO:0071663) |
2.2 | 143.8 | GO:0032094 | response to food(GO:0032094) |
25.6 | 128.2 | GO:2000503 | positive regulation of natural killer cell chemotaxis(GO:2000503) |
11.8 | 118.5 | GO:0046642 | negative regulation of alpha-beta T cell proliferation(GO:0046642) |
7.4 | 110.3 | GO:0001771 | immunological synapse formation(GO:0001771) |
34.1 | 102.4 | GO:0060545 | positive regulation of necroptotic process(GO:0060545) |
25.3 | 101.0 | GO:0002331 | pre-B cell allelic exclusion(GO:0002331) |
9.6 | 95.7 | GO:0050862 | positive regulation of T cell receptor signaling pathway(GO:0050862) |
6.7 | 93.8 | GO:1900118 | negative regulation of execution phase of apoptosis(GO:1900118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 542.9 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.4 | 488.5 | GO:0005615 | extracellular space(GO:0005615) |
1.6 | 338.1 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
4.5 | 179.6 | GO:0098636 | protein complex involved in cell adhesion(GO:0098636) |
13.5 | 107.7 | GO:0044194 | cytolytic granule(GO:0044194) |
9.4 | 103.4 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
0.9 | 96.1 | GO:0005884 | actin filament(GO:0005884) |
0.3 | 91.1 | GO:0009986 | cell surface(GO:0009986) |
0.4 | 80.1 | GO:0016324 | apical plasma membrane(GO:0016324) |
19.7 | 78.8 | GO:0019815 | B cell receptor complex(GO:0019815) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.7 | 833.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.9 | 256.2 | GO:0030246 | carbohydrate binding(GO:0030246) |
5.8 | 215.4 | GO:0008009 | chemokine activity(GO:0008009) |
7.8 | 194.4 | GO:0042288 | MHC class I protein binding(GO:0042288) |
3.3 | 183.1 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
2.0 | 153.9 | GO:1990782 | protein tyrosine kinase binding(GO:1990782) |
1.3 | 151.5 | GO:0004519 | endonuclease activity(GO:0004519) |
35.8 | 107.3 | GO:0004698 | calcium-dependent protein kinase C activity(GO:0004698) |
13.5 | 94.5 | GO:0016286 | small conductance calcium-activated potassium channel activity(GO:0016286) |
2.7 | 93.1 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.4 | 256.5 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.6 | 181.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
1.5 | 138.9 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
3.1 | 137.6 | PID BCR 5PATHWAY | BCR signaling pathway |
3.4 | 124.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
2.8 | 123.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
5.0 | 114.8 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
2.1 | 97.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
8.6 | 94.2 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
1.9 | 90.6 | NABA COLLAGENS | Genes encoding collagen proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
9.0 | 450.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
8.9 | 240.0 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
8.0 | 159.4 | REACTOME INITIAL TRIGGERING OF COMPLEMENT | Genes involved in Initial triggering of complement |
3.2 | 126.2 | REACTOME COSTIMULATION BY THE CD28 FAMILY | Genes involved in Costimulation by the CD28 family |
2.2 | 107.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
1.8 | 106.7 | REACTOME CELL SURFACE INTERACTIONS AT THE VASCULAR WALL | Genes involved in Cell surface interactions at the vascular wall |
2.4 | 100.1 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
2.6 | 94.6 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
3.0 | 83.6 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
2.2 | 80.7 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |