ISMARA results: Rarg

Project

GSE53960: rat RNA-Seq transcriptomic Bodymap

Navigation

Downloads

Results for Rarg

Z-value: 1.22

Motif logo

Transcription factors associated with Rarg

Gene Symbol	Gene ID	Gene Info
Rarg NCBI RGD Ensembl	ENSRNOG00000012499	retinoic acid receptor, gamma

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Rarg	rn6_v1_chr7_-_143863186_143863186	-0.07	1.8e-01	Click!

Activity profile of Rarg motif

Sorted Z-values of Rarg motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_-_4489281 Show fit	28.92	ENSRNOT00000031548	Cyp21a1 NCBI RGD Ensembl Show fit	cytochrome P450, family 21, subfamily a, polypeptide 1
chr10_+_10774639 Show fit	27.97	ENSRNOT00000061208	Sept12 NCBI RGD Ensembl Show fit	septin 12
chr1_-_88066101 Show fit	26.48	ENSRNOT00000079473 ENSRNOT00000027893	Ryr1 NCBI RGD Ensembl Show fit	ryanodine receptor 1
chr1_-_170431073 Show fit	24.96	ENSRNOT00000024710	Hpx NCBI RGD Ensembl Show fit	hemopexin
chr1_+_81763614 Show fit	23.68	ENSRNOT00000027254	Cd79a NCBI RGD Ensembl Show fit	CD79a molecule
chr2_-_183031214 Show fit	23.01	ENSRNOT00000013260	LOC679811 NCBI RGD Ensembl Show fit	similar to RIKEN cDNA D930015E06
chr8_-_128711221 Show fit	21.93	ENSRNOT00000055888	Xirp1 NCBI RGD Ensembl Show fit	xin actin-binding repeat containing 1
chr3_-_80012750 Show fit	21.91	ENSRNOT00000018154	Nr1h3 NCBI RGD Ensembl Show fit	nuclear receptor subfamily 1, group H, member 3
chr11_-_81639872 Show fit	21.70	ENSRNOT00000047595 ENSRNOT00000090031 ENSRNOT00000081864	Hrg NCBI RGD Ensembl Show fit	histidine-rich glycoprotein
chr1_+_165482155 Show fit	21.14	ENSRNOT00000024005	Ucp3 NCBI RGD Ensembl Show fit	uncoupling protein 3

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Rarg

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	59.1	GO:0007283	spermatogenesis(GO:0007283)
10.7	42.9	GO:0060335	positive regulation of response to interferon-gamma(GO:0060332) positive regulation of interferon-gamma-mediated signaling pathway(GO:0060335)
2.1	28.9	GO:0006705	mineralocorticoid biosynthetic process(GO:0006705)
1.9	27.3	GO:0001867	complement activation, lectin pathway(GO:0001867)
1.4	26.5	GO:0043931	ossification involved in bone maturation(GO:0043931)
4.9	24.6	GO:0048550	negative regulation of pinocytosis(GO:0048550)
3.3	23.0	GO:0033088	negative regulation of immature T cell proliferation in thymus(GO:0033088)
3.7	22.1	GO:0032929	negative regulation of superoxide anion generation(GO:0032929)
2.8	22.0	GO:2000427	positive regulation of apoptotic cell clearance(GO:2000427)
7.2	21.7	GO:0097037	heme export(GO:0097037)

Showing 1 to 10 of 376 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.1	139.9	GO:0072562	blood microparticle(GO:0072562)
0.1	82.2	GO:0005615	extracellular space(GO:0005615)
0.5	64.7	GO:0001669	acrosomal vesicle(GO:0001669)
0.3	48.1	GO:0005777	peroxisome(GO:0005777) microbody(GO:0042579)
2.0	44.1	GO:0044217	other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.2	39.6	GO:0005759	mitochondrial matrix(GO:0005759)
0.2	38.0	GO:0005667	transcription factor complex(GO:0005667)
0.0	36.6	GO:0005739	mitochondrion(GO:0005739)
0.3	32.2	GO:0090575	RNA polymerase II transcription factor complex(GO:0090575)
1.7	29.4	GO:0030061	mitochondrial crista(GO:0030061)

Showing 1 to 10 of 152 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	60.5	GO:0004866	endopeptidase inhibitor activity(GO:0004866) endopeptidase regulator activity(GO:0061135)
2.1	59.5	GO:0008395	steroid hydroxylase activity(GO:0008395)
0.3	52.6	GO:0004252	serine-type endopeptidase activity(GO:0004252)
0.2	28.4	GO:0004222	metalloendopeptidase activity(GO:0004222)
3.0	26.9	GO:0015232	heme transporter activity(GO:0015232)
0.5	24.0	GO:0005245	voltage-gated calcium channel activity(GO:0005245)
1.9	22.7	GO:0070008	serine-type exopeptidase activity(GO:0070008)
1.0	22.5	GO:0019865	immunoglobulin binding(GO:0019865)
7.3	21.9	GO:0032810	sterol response element binding(GO:0032810)
5.3	21.1	GO:0017077	oxidative phosphorylation uncoupler activity(GO:0017077)

Showing 1 to 10 of 258 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	80.2	NABA ECM GLYCOPROTEINS	Genes encoding structural ECM glycoproteins
1.4	76.1	PID HNF3B PATHWAY	FOXA2 and FOXA3 transcription factor networks
0.2	53.0	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.7	41.6	PID BCR 5PATHWAY	BCR signaling pathway
0.6	31.0	PID HNF3A PATHWAY	FOXA1 transcription factor network
0.7	29.5	PID RXR VDR PATHWAY	RXR and RAR heterodimerization with other nuclear receptor
0.5	24.2	NABA BASEMENT MEMBRANES	Genes encoding structural components of basement membranes
0.6	20.6	ST MYOCYTE AD PATHWAY	Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.5	17.7	PID GLYPICAN 1PATHWAY	Glypican 1 network
1.2	17.5	PID ALK2 PATHWAY	ALK2 signaling events

Showing 1 to 10 of 56 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	54.9	REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY	Genes involved in Nuclear Receptor transcription pathway
1.4	53.3	REACTOME STRIATED MUSCLE CONTRACTION	Genes involved in Striated Muscle Contraction
0.5	40.1	REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS	Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
0.9	35.3	REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS	Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers
2.3	34.4	REACTOME COMMON PATHWAY	Genes involved in Common Pathway
2.4	34.1	REACTOME REGULATION OF COMPLEMENT CASCADE	Genes involved in Regulation of Complement cascade
0.4	32.2	REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2	Genes involved in Response to elevated platelet cytosolic Ca2+
2.3	30.5	REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL	Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
0.5	29.7	REACTOME METABOLISM OF VITAMINS AND COFACTORS	Genes involved in Metabolism of vitamins and cofactors
0.2	27.0	REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES	Genes involved in Metabolism of amino acids and derivatives

Showing 1 to 10 of 87 entries

Results for Rarg

Z-value: 1.22

Motif logo

Transcription factors associated with Rarg

Activity-expression correlation:

Activity profile of Rarg motif

Sorted Z-values of Rarg motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Rarg

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: