GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Prdm14 | rn6_v1_chr5_+_5710392_5710392 | 0.06 | 2.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_148119857 Show fit | 48.07 |
ENSRNOT00000040325
|
Cytochrome P450, family 2, subfamily c, polypeptide 7-like |
|
chr20_-_4542073 Show fit | 35.00 |
ENSRNOT00000000477
|
complement factor B |
|
chr13_+_78805347 Show fit | 32.70 |
ENSRNOT00000003748
|
serpin family C member 1 |
|
chr9_+_95241609 Show fit | 26.88 |
ENSRNOT00000032634
ENSRNOT00000077416 |
UDP glucuronosyltransferase family 1 member A5 |
|
chr2_-_210809306 Show fit | 19.68 |
ENSRNOT00000047139
|
glutathione S-transferase mu 1 |
|
chr1_-_102826965 Show fit | 16.69 |
ENSRNOT00000078692
|
serum amyloid A4 |
|
chr3_+_92640752 Show fit | 16.07 |
ENSRNOT00000007604
|
solute carrier family 1 member 2 |
|
chr3_-_138116664 Show fit | 12.78 |
ENSRNOT00000055602
|
ribosome binding protein 1 |
|
chrX_-_138435391 Show fit | 12.06 |
ENSRNOT00000043258
|
muscleblind-like splicing regulator 3 |
|
chr1_+_184301493 Show fit | 11.87 |
ENSRNOT00000078096
|
inscuteable homolog (Drosophila) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 48.1 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
3.2 | 35.0 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
8.2 | 32.7 | GO:0007597 | blood coagulation, intrinsic pathway(GO:0007597) |
3.0 | 26.9 | GO:0052697 | xenobiotic glucuronidation(GO:0052697) |
6.6 | 19.7 | GO:0018916 | nitrobenzene metabolic process(GO:0018916) |
0.3 | 16.7 | GO:0006953 | acute-phase response(GO:0006953) |
3.2 | 16.1 | GO:0070777 | D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779) |
0.0 | 12.8 | GO:0001649 | osteoblast differentiation(GO:0001649) |
0.4 | 12.1 | GO:0045662 | negative regulation of myoblast differentiation(GO:0045662) |
0.4 | 11.9 | GO:0000132 | establishment of mitotic spindle orientation(GO:0000132) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 67.7 | GO:0072562 | blood microparticle(GO:0072562) |
0.1 | 19.7 | GO:0043209 | myelin sheath(GO:0043209) |
0.6 | 16.7 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.5 | 16.1 | GO:0030673 | axolemma(GO:0030673) |
0.1 | 12.8 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 11.9 | GO:0045177 | apical part of cell(GO:0045177) |
0.1 | 10.1 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.1 | 9.9 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.0 | 5.8 | GO:0005764 | lytic vacuole(GO:0000323) lysosome(GO:0005764) |
0.3 | 4.3 | GO:0032039 | integrator complex(GO:0032039) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 48.1 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.2 | 35.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.3 | 32.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.9 | 26.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.0 | 25.6 | GO:0003723 | RNA binding(GO:0003723) |
2.5 | 19.7 | GO:0016151 | nickel cation binding(GO:0016151) |
3.2 | 16.1 | GO:0005314 | high-affinity glutamate transmembrane transporter activity(GO:0005314) |
0.1 | 10.1 | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances(GO:0042626) |
0.8 | 10.0 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.4 | 8.9 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 35.0 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.8 | 32.7 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.2 | 23.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 2.9 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.9 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.4 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 35.0 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
2.2 | 32.7 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.5 | 29.1 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
1.4 | 26.9 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.7 | 19.7 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.5 | 10.1 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.1 | 2.6 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 1.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 1.0 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 0.9 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |