GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Prdm1 | rn6_v1_chr20_-_49486550_49486552 | 0.55 | 1.1e-26 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_215660492 Show fit | 37.04 |
ENSRNOT00000079442
|
|
|
chr5_-_58198782 Show fit | 34.86 |
ENSRNOT00000023951
|
C-C motif chemokine ligand 21 |
|
chr10_-_5251809 Show fit | 33.83 |
ENSRNOT00000085479
|
class II, major histocompatibility complex, transactivator |
|
chr1_-_237910012 Show fit | 26.81 |
ENSRNOT00000023664
|
annexin A1 |
|
chr4_+_98337367 Show fit | 21.89 |
ENSRNOT00000042165
|
|
|
chr8_+_49713190 Show fit | 21.29 |
ENSRNOT00000022074
|
FXYD domain-containing ion transport regulator 2 |
|
chr20_-_1878126 Show fit | 21.16 |
ENSRNOT00000000995
|
ubiquitin D |
|
chr13_-_109849632 Show fit | 20.76 |
ENSRNOT00000005085
|
activating transcription factor 3 |
|
chr13_+_48575091 Show fit | 20.69 |
ENSRNOT00000009838
|
peptidase M20 domain containing 1 |
|
chr2_+_209097927 Show fit | 17.23 |
ENSRNOT00000023807
|
DENN domain containing 2D |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
12.2 | 60.9 | GO:0002408 | myeloid dendritic cell chemotaxis(GO:0002408) |
4.8 | 33.8 | GO:0045343 | MHC class I biosynthetic process(GO:0045341) regulation of MHC class I biosynthetic process(GO:0045343) positive regulation of MHC class I biosynthetic process(GO:0045345) |
8.1 | 32.3 | GO:0045627 | positive regulation of T-helper 1 cell differentiation(GO:0045627) |
0.0 | 30.8 | GO:0006412 | translation(GO:0006412) |
1.3 | 21.3 | GO:0010248 | establishment or maintenance of transmembrane electrochemical gradient(GO:0010248) |
2.6 | 21.2 | GO:0070842 | aggresome assembly(GO:0070842) |
5.2 | 20.8 | GO:1903984 | positive regulation of TRAIL-activated apoptotic signaling pathway(GO:1903984) |
6.9 | 20.7 | GO:0043605 | cellular amide catabolic process(GO:0043605) |
0.8 | 20.3 | GO:0006855 | drug transmembrane transport(GO:0006855) |
2.0 | 17.6 | GO:0003374 | dynamin polymerization involved in membrane fission(GO:0003373) dynamin polymerization involved in mitochondrial fission(GO:0003374) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 52.8 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.1 | 36.1 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.0 | 33.6 | GO:0005730 | nucleolus(GO:0005730) |
0.3 | 32.7 | GO:0016605 | PML body(GO:0016605) |
3.0 | 26.8 | GO:0031313 | extrinsic component of endosome membrane(GO:0031313) |
1.8 | 21.3 | GO:0005890 | sodium:potassium-exchanging ATPase complex(GO:0005890) |
0.4 | 21.2 | GO:0016235 | aggresome(GO:0016235) |
6.9 | 20.8 | GO:1990622 | CHOP-ATF3 complex(GO:1990622) |
0.1 | 18.0 | GO:0005925 | focal adhesion(GO:0005925) |
0.1 | 17.6 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 60.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
1.6 | 57.2 | GO:0008009 | chemokine activity(GO:0008009) |
0.5 | 41.3 | GO:0033613 | activating transcription factor binding(GO:0033613) |
0.1 | 40.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 30.9 | GO:0003924 | GTPase activity(GO:0003924) |
5.4 | 26.8 | GO:0019834 | phospholipase A2 inhibitor activity(GO:0019834) |
1.4 | 25.8 | GO:0070628 | proteasome binding(GO:0070628) |
1.1 | 23.1 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
1.5 | 21.3 | GO:0005391 | sodium:potassium-exchanging ATPase activity(GO:0005391) |
0.2 | 20.8 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 52.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 48.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.3 | 44.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.4 | 24.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.5 | 22.9 | NABA COLLAGENS | Genes encoding collagen proteins |
0.4 | 16.9 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.8 | 14.9 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.6 | 13.6 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.4 | 11.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.7 | 10.0 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 83.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
1.1 | 63.7 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.8 | 26.8 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.2 | 26.8 | REACTOME G ALPHA Q SIGNALLING EVENTS | Genes involved in G alpha (q) signalling events |
0.2 | 24.4 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.7 | 20.8 | REACTOME ACTIVATION OF GENES BY ATF4 | Genes involved in Activation of Genes by ATF4 |
0.5 | 20.1 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.4 | 16.2 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.8 | 14.4 | REACTOME RIP MEDIATED NFKB ACTIVATION VIA DAI | Genes involved in RIP-mediated NFkB activation via DAI |
0.3 | 12.9 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |