GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Fosl2 | rn6_v1_chr6_-_25616995_25616995 | 0.65 | 2.8e-40 | Click! |
Bach2 | rn6_v1_chr5_+_47546014_47546014 | -0.57 | 2.4e-29 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_9777465 Show fit | 79.64 |
ENSRNOT00000017413
|
NDRG family member 4 |
|
chr1_-_198232344 Show fit | 72.77 |
ENSRNOT00000080988
|
aldolase, fructose-bisphosphate A |
|
chr7_+_59200918 Show fit | 64.67 |
ENSRNOT00000085073
|
protein tyrosine phosphatase, receptor type, R |
|
chr3_+_152552822 Show fit | 62.09 |
ENSRNOT00000089719
|
erythrocyte membrane protein band 4.1-like 1 |
|
chr1_+_105284753 Show fit | 61.54 |
ENSRNOT00000041950
|
solute carrier family 6 member 5 |
|
chrX_-_142248369 Show fit | 60.73 |
ENSRNOT00000091330
|
fibroblast growth factor 13 |
|
chr9_+_38297322 Show fit | 44.89 |
ENSRNOT00000078157
ENSRNOT00000088824 |
BEN domain containing 6 |
|
chr13_-_73819896 Show fit | 41.52 |
ENSRNOT00000036392
|
family with sequence similarity 163, member A |
|
chr16_-_81880502 Show fit | 41.51 |
ENSRNOT00000079096
|
MCF.2 cell line derived transforming sequence-like |
|
chr1_-_42587666 Show fit | 41.40 |
ENSRNOT00000083225
ENSRNOT00000025355 |
regulator of G-protein signaling 17 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.8 | 79.6 | GO:2001135 | regulation of endocytic recycling(GO:2001135) |
6.1 | 72.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
1.2 | 65.4 | GO:0030239 | myofibril assembly(GO:0030239) |
16.2 | 64.7 | GO:0038128 | ERBB2 signaling pathway(GO:0038128) |
2.0 | 62.1 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
12.3 | 61.5 | GO:0036233 | glycine import(GO:0036233) |
8.7 | 60.7 | GO:0045196 | establishment or maintenance of neuroblast polarity(GO:0045196) establishment of neuroblast polarity(GO:0045200) |
6.5 | 58.6 | GO:0061718 | NADH regeneration(GO:0006735) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.0 | 49.4 | GO:0007608 | sensory perception of smell(GO:0007608) |
1.3 | 45.9 | GO:0010664 | negative regulation of striated muscle cell apoptotic process(GO:0010664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 161.1 | GO:0014069 | postsynaptic density(GO:0014069) |
1.2 | 156.7 | GO:0031674 | I band(GO:0031674) |
0.9 | 84.0 | GO:0044291 | cell-cell contact zone(GO:0044291) |
4.3 | 72.8 | GO:0035686 | sperm fibrous sheath(GO:0035686) |
0.3 | 64.7 | GO:0031253 | cell projection membrane(GO:0031253) |
9.8 | 58.6 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.5 | 54.7 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.3 | 42.5 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
7.9 | 39.6 | GO:0005927 | muscle tendon junction(GO:0005927) |
0.1 | 37.5 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 150.3 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.9 | 93.1 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
1.7 | 73.4 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
10.4 | 72.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
20.5 | 61.5 | GO:0005294 | neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294) |
9.8 | 58.6 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
1.9 | 54.1 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.0 | 46.1 | GO:0004984 | olfactory receptor activity(GO:0004984) |
1.3 | 44.9 | GO:0001106 | RNA polymerase II transcription corepressor activity(GO:0001106) |
0.4 | 44.0 | GO:0005178 | integrin binding(GO:0005178) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 72.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
1.5 | 55.3 | PID NECTIN PATHWAY | Nectin adhesion pathway |
1.0 | 50.7 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
1.2 | 43.5 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.7 | 39.7 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
1.2 | 38.8 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.2 | 37.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.8 | 30.5 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.8 | 28.6 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.7 | 27.5 | PID RAS PATHWAY | Regulation of Ras family activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.6 | 102.8 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
1.3 | 65.5 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
1.9 | 65.2 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
2.7 | 61.5 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.6 | 57.0 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
1.0 | 45.1 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
1.1 | 35.4 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
1.8 | 33.4 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
2.1 | 32.2 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.3 | 30.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |